Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,563,260 – 11,563,362 |
Length | 102 |
Max. P | 0.596754 |
Location | 11,563,260 – 11,563,362 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 84.08 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -16.58 |
Energy contribution | -16.52 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.19 |
Mean z-score | -1.65 |
Structure conservation index | 0.67 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11563260 102 - 20766785 AUAGUAGCUAAAACAGAUUAGUGUACAUGAAGUAACUUUCCUUUAUUAAGGAUGGUUUUUGUAUGCUCACUAGGAAUCCUUGAGGGAGCGCACUAUUUCUUG (((((.(((........((((((..((((....((((.(((((....))))).))))....))))..))))))...(((....))))))..)))))...... ( -26.30) >DroSim_CAF1 61 99 - 1 AUAGUAGCUGAAACAAAUUAGUAUACAUGAAUGUAC--UCCUUUAUUAAGGAUUGUU-UUGUAUGCUCACUAGGAAUCCUUUAGGGAGCGCACUAUUUCUUG (((((.((.(((((((....(((((......)))))--(((((....))))))))))-))....((((.(((((.....))))).)))))))))))...... ( -24.30) >DroEre_CAF1 79 99 - 1 AUAGUAGCUAAAACAGAUUGGUAUACAUGAAUCACC--UCAUCCAUUGAGGAUUUCU-UUGUAUGCUUACUAGGAAUCCUUUAGGGAGCGCACUAUUUGCUG (((((.((.......((((.((....)).))))...--...(((...((((((((((-..(((....))).))))))))))...)))))..)))))...... ( -26.30) >DroYak_CAF1 81 99 - 1 GUAGUAGCUAAAACAGAUUGGUACACAUGGAUGAAC--UCUUGAAUUGAGGAUUUGC-UUGUAAGCUUACUAGGAAUCCUUUAGGGAGCGCACUAUUUGUUG ......(((((......)))))(((.((((.((..(--((((.....((((((((.(-(.(((....))).))))))))))..)))))..)))))).))).. ( -22.20) >consensus AUAGUAGCUAAAACAGAUUAGUAUACAUGAAUGAAC__UCCUUUAUUAAGGAUUGUU_UUGUAUGCUCACUAGGAAUCCUUUAGGGAGCGCACUAUUUCUUG (((((.(((........((((((..((((.........(((((....))))).........))))..))))))...(((....))))))..)))))...... (-16.58 = -16.52 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:57 2006