Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,559,338 – 11,559,440 |
Length | 102 |
Max. P | 0.552815 |
Location | 11,559,338 – 11,559,440 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 78.24 |
Mean single sequence MFE | -31.68 |
Consensus MFE | -16.58 |
Energy contribution | -18.00 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.19 |
Mean z-score | -1.81 |
Structure conservation index | 0.52 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552815 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11559338 102 + 20766785 ACGCUUCCGAUGGAACGGAGGAGUACCAGCGCAAGCAACUGGCCCAGGAUAUGAAGCGCAUCAUGUCAAAUUCAAAUGCGCACUCCAGUCACA------AGAAGGCA---G ..(((((((......))))(((((....(((((.....(((...)))(((((((......))))))).........)))))))))).......------....))).---. ( -29.50) >DroVir_CAF1 1478 108 + 1 AUGCCUCCGACGGUGCUGAGGAUUAUCAACGCAAGCAGCUCGCCCAGGACAUGAAACGCAUCAUGUCCAAUACACACACGCACACCACACACACCCAGAAGCAGGGU---C .(((...(((.(.((((..(.........)...)))).))))....((((((((......))))))))...........)))..........((((.......))))---. ( -26.60) >DroSim_CAF1 1526 102 + 1 ACGCCUCCGAUGGAACGGAGGAGUACCAGCGCAAGCAACUGGCCCAGGACAUGAAGCGCAUCAUGUCAAAUUCAAAUGCGCACUCUAGUCACA------AGAAGGCU---G ((.((((((......)))))).))....(((((.....(((...)))(((((((......))))))).........)))))....(((((...------....))))---) ( -32.40) >DroYak_CAF1 1530 102 + 1 ACGCCUCUGAUGGAACGGAGGAGUAUCAGCGCAAGCAACUGGCCCAGGACAUGAAGCGCAUCAUGUCCAAUUCGAAUACGCACUCCAGUCACA------AGAAGGCA---G ..((((((..(((...((((..(((((.((....))..........((((((((......)))))))).....).))))...))))..)))..------)).)))).---. ( -37.30) >DroMoj_CAF1 1492 108 + 1 AUGCCAACGACGGCGCUGAGGAUUAUCAACGCAAGCAGCUGGCCCAGGACAUGAAGCGCAUCAUGUCCAAUACACACACGCACA---CACACGCGCAGAAAAAAGUUAACC ..((((.(....(((.(((......))).))).....).))))...((((((((......))))))))..........(((...---.....)))................ ( -27.70) >DroAna_CAF1 1485 102 + 1 AUGCAUCGGAUGGAACGGAGGAGUACCAGCGCAAGCAGCUGGCCCAGGACAUGCGGCGCAUCAUGUCCAAUUCCAACGACCACUCCAGCCACA------AGAAGGCG---G .......((((((..((..(((((.(((((.......)))))....(((((((........))))))).)))))..)).))).))).(((...------....))).---. ( -36.60) >consensus ACGCCUCCGAUGGAACGGAGGAGUACCAGCGCAAGCAACUGGCCCAGGACAUGAAGCGCAUCAUGUCCAAUUCAAACACGCACUCCAGUCACA______AGAAGGCU___G ..((((.....((..(((.((....)).((....))..)))..)).((((((((......))))))))..................................))))..... (-16.58 = -18.00 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:56 2006