Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,552,705 – 11,552,810 |
Length | 105 |
Max. P | 0.556017 |
Location | 11,552,705 – 11,552,810 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 78.11 |
Mean single sequence MFE | -25.36 |
Consensus MFE | -19.15 |
Energy contribution | -19.48 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.17 |
Mean z-score | -0.91 |
Structure conservation index | 0.75 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.556017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11552705 105 + 20766785 UA-----AUCCACGAAACC------UG-GUUCCC--CGGCGGUGCUCCAUUUGUUGGCUACUGCGUGUUUAGCAAUUUGUGGUUAUAUUAUAAUGACCACUUGAUUUGCGUUUGCGUCG ..-----....(((((((.------((-(....)--))((((((..(((.....))).)))))).......((((...((((((((......)))))))).....)))))))).))).. ( -27.40) >DroPse_CAF1 12326 111 + 1 AUACCUAAUGCCCAAUACCAACCGCUGAGCUCCUUGCCACGAUUUUCCAUU---UGUACAUUGCGUGUUUAGCAAUUUGCGGUUAUAAUAUAAUGACCACUUGAUUUGCUUUUG----- ((((.(((((..(((.......((.((.((.....)))))).........)---))..))))).))))..(((((...(.((((((......)))))).).....)))))....----- ( -19.49) >DroSim_CAF1 13013 105 + 1 AA-----AUCCACGAAACC------UG-GUUCCC--CGGCGGUGCUCCAUUUGUUGGCCACUGCGUGUUUAGCAAUUUGUGGUUAUAUUAUAAUGACCACUUGAUUUGCGUUUGCGUCG ..-----....(((((((.------((-(....)--))((((((..(((.....))).)))))).......((((...((((((((......)))))))).....)))))))).))).. ( -29.30) >DroEre_CAF1 13084 101 + 1 -A-----AUCCACGAAACC------UG-GUUCCC--CGGCGGUGUUCCAUU---UGGCCACUGCGUGUUUAGCAAUUUGUGGUUGUAUUAUAAUGACCACUUGAUUUGCGUUUGCGUCG -.-----....(((((((.------((-(....)--))((((((..((...---.)).)))))).......((((...(((((..(......)..))))).....)))))))).))).. ( -27.00) >DroYak_CAF1 13086 102 + 1 UU-----AUCCACGAAACC------UG-GUUCCC--CGGCGGUGUUCCAUU---UGGCCACUGCGUGUUUAGCAAUUUGUGGUUAUAUUAUAAUGACCACUUGAUUUGCGUUUGCGUCG .(-----(..(((......------((-(....)--))((((((..((...---.)).)))))))))..))((((...((((((((......)))))))).....)))).......... ( -28.40) >DroAna_CAF1 10449 84 + 1 ------------------------------UUAC--CUGCCAUGUUCCAUU---UGGCCAUUGCGUGCUUAGCAAUUUGCGGUUAUAUUAUAAUGACCACUUGAUUUGCGUUUGCGCUG ------------------------------....--..((.(((..((...---.)).))).))((((...((((...(.((((((......)))))).).....))))....)))).. ( -20.60) >consensus _A_____AUCCACGAAACC______UG_GUUCCC__CGGCGGUGUUCCAUU___UGGCCACUGCGUGUUUAGCAAUUUGUGGUUAUAUUAUAAUGACCACUUGAUUUGCGUUUGCGUCG ......................................((((((..(((.....))).))))))..((...((((...((((((((......)))))))).....))))....)).... (-19.15 = -19.48 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:52 2006