Locus 3413

Sequence ID 2R_DroMel_CAF1
Location 11,551,046 – 11,551,158
Length 112
Max. P 0.820175
window5569

overview

Window 9

Location 11,551,046 – 11,551,158
Length 112
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -26.88
Consensus MFE -18.75
Energy contribution -19.28
Covariance contribution 0.53
Combinations/Pair 1.20
Mean z-score -1.96
Structure conservation index 0.70
SVM decision value 0.68
SVM RNA-class probability 0.820175
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11551046 112 - 20766785
UAAGCGUACUAUAUAUUUUUAUGGCAAUUUUCAUAUGCCUGCGCUUAAAAUCGCGUUGACUGCCAGCGGCCUCGGGAGGUUUUUCCCAACCUCCGC----CC-CUUAAUCCCCCCU-C
((((((((..(((......)))((((.........)))))))))))).......((((.....))))(((....(((((((......)))))))))----).-.............-. ( -28.00)
>DroSec_CAF1 11254 116 - 1
UAAGCGUACUAUAUAUUUUUAUGGCAAUUUUCAUAUGCCUGCGCUUAAAAUCGCGUUGACUGCCAGCGGCCUCGGGAGGUUUUCCCCAACCUCCACCUACCC-CCUAUCUACCCCG-C
((((((((..(((......)))((((.........)))))))))))).....((((((.....))))((.....(((((((......))))))).....)).-............)-) ( -27.90)
>DroSim_CAF1 11325 108 - 1
UAAGCGUACUAU--------AUGGCAAUUUUCAUAUGCCUGCGCUUAAAAUCGCGUUGACUGCCAGCGGCCUCGGGAGGUUUUCCCCAACCCCCACCUACCC-CCUAUCUACCCCU-C
((((((((.(((--------((((......)))))))..))))))))......(((((.....))))).....(((.((((......)))))))........-.............-. ( -27.00)
>DroEre_CAF1 11298 113 - 1
UAAGCGUACUAUAUAUUUUUAUGGCAAUUUUCAUAUGCCUGCGCUUAAAAUCGCGUUGACUGCCUGCGGCCUCGGGAGGUUUUCCCCAACCUCCAC----CC-CUUACCCUCCCCUUU
((((((((..(((......)))((((.........))))))))))))......((..(.(((....))))..))(((((((......)))))))..----..-............... ( -26.00)
>DroYak_CAF1 11351 114 - 1
UAAGCGUACUAUAUAUUUUUAUGGCAAUUUUCAUAUGCCUGCGCUUAAAAUCGCGUUGACUGCCUGCGGCCUCGGGAGGUUUUCCCCAACCUCAAC----CCCCUUACCCCCCUCCAU
((((((((..(((......)))((((.........))))))))))))......((..(.(((....))))..)).((((((......))))))...----.................. ( -22.70)
>DroAna_CAF1 9602 114 - 1
UUCGCGUGCUACAUAUUUUUAUGCCAAUUUUCAUAUGGCUUUGCUUGAUGUGGCGCUGACUGCCUACGGCCUCGAGUGGCG--CCUCCACCCGAAUCUGCCC-CCCUCCUCCUCCU-C
.(((.(((((((((........((((.........))))........))))))))))))........(((.(((.((((..--...)))).)))....))).-.............-. ( -29.69)
>consensus
UAAGCGUACUAUAUAUUUUUAUGGCAAUUUUCAUAUGCCUGCGCUUAAAAUCGCGUUGACUGCCAGCGGCCUCGGGAGGUUUUCCCCAACCUCCAC____CC_CCUACCCCCCCCU_C
((((((((..............((((.........))))))))))))......((..(.(((....))))..))(((((((......)))))))........................ (-18.75 = -19.28 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:51 2006