Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,548,580 – 11,548,694 |
Length | 114 |
Max. P | 0.937051 |
Location | 11,548,580 – 11,548,694 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.61 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -13.94 |
Energy contribution | -17.02 |
Covariance contribution | 3.08 |
Combinations/Pair | 1.07 |
Mean z-score | -2.29 |
Structure conservation index | 0.54 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11548580 114 + 20766785 AAA-AAACGAAUUCUCCAUGUCGUUGAAAAGUUGUCAAUUAGUUU-----AUAUUGCUAGUCGCGCAACUUUUAAAUGCAAUUGGAUUGAAUUUAUUCGCUAAUUGCUCGAAACUCAACA ...-..................((((((((((((((.((((((..-----.....)))))).).)))))))).....((((((((...(((....))).)))))))).......))))). ( -25.40) >DroSec_CAF1 8764 114 + 1 AAA-AAACGAAUGCUCCAUGUCGUUCAAAAGUUGUCAAUUAGUUU-----AUAUUGCUAGUCGCGCAACUUUUGAAUGCAAUUGGUUUGAAUUUAUUCGCUAAUUGCUCGAAACUCAACA ...-...(((............((((((((((((((.((((((..-----.....)))))).).)))))))))))))(((((((((..(((....))))))))))))))).......... ( -31.30) >DroSim_CAF1 8818 115 + 1 AAAAAAACGAAUGCUCCAUGUCGUUCAAAAGUUGUCAAUUAGUUU-----AUAUUGCUAGUCGCGCAACUUUUGAAUGCAAUUGGAUUGAAUUUAUUCGCUAAUUGCUCGAAACUCAACA .......(((............((((((((((((((.((((((..-----.....)))))).).)))))))))))))((((((((...(((....))).))))))))))).......... ( -30.50) >DroEre_CAF1 8859 96 + 1 AAU-AGACACAU------------------GUUGUCAAUUAGUUU-----AUAUUUCCAGUCGCGCAACUAUUGAAGUGAAUUGGCUGCAUUUUAUUUGCUAAUUGCCUAAAUCCCAACU ...-.((((...------------------..))))(((((((..-----(((....((((((....(((.....)))....)))))).....)))..)))))))............... ( -17.10) >DroYak_CAF1 8877 117 + 1 AAU-AAACGAAUGCUUCAUGUCGUUCAAAAGUUGUCAAUUAGUUUACCAUAUAUUGCUAGUCGCUCAGCUUUUGAAGUGAAUUGGAUUCAUUUCAUUCGCUAGUUGCUUAGUU--CAAUA ...-....((((((..(.......((((((((((.(.((((((............)))))).)..))))))))))(((((((.(((.....)))))))))).)..))...)))--).... ( -25.20) >consensus AAA_AAACGAAUGCUCCAUGUCGUUCAAAAGUUGUCAAUUAGUUU_____AUAUUGCUAGUCGCGCAACUUUUGAAUGCAAUUGGAUUGAAUUUAUUCGCUAAUUGCUCGAAACUCAACA ......................((((((((((((((.((((((............)))))).).)))))))))))))((((((((..............))))))))............. (-13.94 = -17.02 + 3.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:50 2006