Locus 3411

Sequence ID 2R_DroMel_CAF1
Location 11,546,185 – 11,546,277
Length 92
Max. P 0.750933
window5567

overview

Window 7

Location 11,546,185 – 11,546,277
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 90.53
Mean single sequence MFE -35.00
Consensus MFE -28.32
Energy contribution -29.44
Covariance contribution 1.12
Combinations/Pair 1.08
Mean z-score -1.74
Structure conservation index 0.81
SVM decision value 0.48
SVM RNA-class probability 0.750933
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11546185 92 - 20766785
ACCUUACUCUCCACCCCAUCAAAGUCCAGCCUGGUAGGCGCUCUCGCAAGGUGCUCUCCCACGCACGCAUGCGCCGCGUGAGAGCGAGAGAG
......(((((.................(((.....)))((((((((..(((((................)))))..))))))))))))).. ( -35.09)
>DroSec_CAF1 6294 91 - 1
CCCUUACUCACCACCCCAUCAAAGUCCAGCCUGGUGGGCGCUCUCGCA-GGUGCCCUGCCACGCACGCAUGCGCCGCAUGAGAGCGAGAGAG
......(((.....(((((((..........)))))))((((((((..-(((((..(((.......))).)))))...)))))))).))).. ( -35.50)
>DroSim_CAF1 6320 91 - 1
CCCUUACUCUCCAUCCCAUCAAAGUCCAGCCUGGUGGGCGCUCUCGCA-GGUGCCCUACCACGCACGCAUGCGCCGCAUGAGAGCGAGAGAG
......(((((...(((((((..........)))))))(((((((((.-.((((........))))))((((...))))))))))).))))) ( -34.30)
>DroYak_CAF1 6403 91 - 1
CCCUCGCUCUCCACUCCAUAAAAGUCCAGCCUGGUGGGCUCUCUCGCA-GGUGCUCUCCCACGCACGCAGGCGCUCCGUGAGAGCGAGAGAG
..(((((((((((((.......)))...((((((((((....))))).-.((((........)))).))))).....).))))))))).... ( -35.10)
>consensus
CCCUUACUCUCCACCCCAUCAAAGUCCAGCCUGGUGGGCGCUCUCGCA_GGUGCCCUCCCACGCACGCAUGCGCCGCAUGAGAGCGAGAGAG
......(((((...(((((((..........)))))))(((((((((..(((((................)))))..))))))))).))))) (-28.32 = -29.44 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:49 2006