Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,544,530 – 11,544,641 |
Length | 111 |
Max. P | 0.543008 |
Location | 11,544,530 – 11,544,641 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 85.51 |
Mean single sequence MFE | -38.22 |
Consensus MFE | -29.23 |
Energy contribution | -30.47 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.10 |
Mean z-score | -1.44 |
Structure conservation index | 0.76 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11544530 111 + 20766785 -GGGUUCAGUGGGCCGGUGAUGGUGGUGGUGGUGAUGCUGCUAUCGCUGUUGCAGCUACUGCUGUUCUAUGGGCUAU-----CCUUGUUGGGCUAUCGCUGACAUAUAUCUUUGCCU-- -((((((((((((((.(((((((((((((..(.....)..)))))))))))(((((....)))))...)).)))).(-----((.....)))....))))))...........))))-- ( -39.90) >DroSec_CAF1 4641 111 + 1 -GGGUUCAGUGGGCCGGUGAUGGCGGUGAUGGUGAUGCUGCUAUCGCUGUUGCAGCUACUGCUGUUCUAUGGGCUAU-----CCUUGCUGGGCUAUCGCUGACAUAUAUCUUUGCCU-- -(((((((((((.((((((((((((((((((((......)))))))))...(((((....))))).......)))))-----)...))))).)...))))))...........))))-- ( -40.70) >DroSim_CAF1 4651 111 + 1 -GGGUUCAGUGGGCCGGUGAUGGUGGUGAUGGUGAUGCUGCUAUCGCUGUUGCAGCUACUGCUGUUCUAUGGGCUAU-----CCUUGCUGGGCUAUCGCUGACAUAUAUCUUUGCCU-- -(((((((((((.((((..(.((((((((((((......)))))).((((.(((((....)))))...)))))))))-----).)..)))).)...))))))...........))))-- ( -39.50) >DroYak_CAF1 4727 102 + 1 GGGAUUCAGUGGGCCGGUGAUGG------------UGGUGAUGCUGCUGUUGCAG---CUGCUGUUCUAUGGGCUAUGGGCUCCUUGCUGG--UAUCGCUGACAUAUAUCUUUGCCUUU (((((((((((((((((..(.((------------.(.(.(((((((....))))---).(((........))).)).).).)))..))))--).))))))).....)))))....... ( -32.80) >consensus _GGGUUCAGUGGGCCGGUGAUGGUGGUGAUGGUGAUGCUGCUAUCGCUGUUGCAGCUACUGCUGUUCUAUGGGCUAU_____CCUUGCUGGGCUAUCGCUGACAUAUAUCUUUGCCU__ .....((((((((((((((((((((((.........))))))))))))...(((((....)))))......)))).......((.....)).....))))))................. (-29.23 = -30.47 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:48 2006