Locus 341

Sequence ID 2R_DroMel_CAF1
Location 2,240,054 – 2,240,147
Length 93
Max. P 0.560395
window684

overview

Window 4

Location 2,240,054 – 2,240,147
Length 93
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 83.52
Mean single sequence MFE -18.69
Consensus MFE -11.73
Energy contribution -13.07
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.36
Structure conservation index 0.63
SVM decision value 0.05
SVM RNA-class probability 0.560395
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2240054 93 + 20766785
AUACAAUCAAUCACUAU----------CUAACUGUCUGUGGUUA---UCCACAUUCAGUUAAACUGUUGCCUUACUCCCACAGAGAGAUAUCCUGAAAAAUGAUAU
.....((((.(((.(((----------(((((((..(((((...---.)))))..)))))...((((.(........).))))..)))))...)))....)))).. ( -19.20)
>DroSec_CAF1 6543 93 + 1
AUACAAUCAAUCACUAU----------CUAACUGUCUGUGGUUA---UCCACAUUCAGUUAAACUGUUGCCUUACUCCCACAGAGAGAUAUCCUGAAAAAUGAUAU
.....((((.(((.(((----------(((((((..(((((...---.)))))..)))))...((((.(........).))))..)))))...)))....)))).. ( -19.20)
>DroSim_CAF1 6553 93 + 1
AUACAAUCAAUCACUAU----------CUAACUGUCUGUGGUUA---UCCACAUUCAGUUAAACUGUUGCCUUACUCCCACAGAGAGAUAUCCUGAAAAAUGAUAU
.....((((.(((.(((----------(((((((..(((((...---.)))))..)))))...((((.(........).))))..)))))...)))....)))).. ( -19.20)
>DroEre_CAF1 6659 89 + 1
AUACAA----UCACUAU----------CUAACUGUCUGUGGAUA---UCCACACUCAGUUAAACUGUUGCCUUACUCCCACAGAGAGAUAUCCUGAAAAAUGAUAU
.....(----(((....----------.((((((..(((((...---.)))))..))))))...................(((.((....))))).....)))).. ( -19.40)
>DroWil_CAF1 25187 90 + 1
AUACAAU---UCAUUAUGCUUUGUUCAUUAAUUGGUUUUGGU----------AUU---UAAAAUUGUUGCCUUACUCCCACAGAGAGAUAUCCUGAAAAAUGAGGU
..(((((---(....(((((....(((.....)))....)))----------)).---...)))))).((((((......(((.((....))))).....)))))) ( -15.20)
>DroAna_CAF1 6789 92 + 1
AUACAA----UCACUAU----------CUAACUGGCUGUGGCUUAGCCCCACACUCAGUUAAACUGUUGCCUUACUCCCACAGAGAGAUAUCCUGAAAAACGAGGU
......----.......----------.((((((..(((((.......)))))..)))))).......(((((.......(((.((....)))))......))))) ( -19.92)
>consensus
AUACAAU___UCACUAU__________CUAACUGUCUGUGGUUA___UCCACAUUCAGUUAAACUGUUGCCUUACUCCCACAGAGAGAUAUCCUGAAAAAUGAUAU
............................((((((..(((((.......)))))..))))))...................(((.((....)))))........... (-11.73 = -13.07 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:57 2006