Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,538,999 – 11,539,103 |
Length | 104 |
Max. P | 0.895101 |
Location | 11,538,999 – 11,539,103 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.75 |
Mean single sequence MFE | -33.51 |
Consensus MFE | -23.90 |
Energy contribution | -23.82 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.18 |
Mean z-score | -1.73 |
Structure conservation index | 0.71 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11538999 104 - 20766785 ----GGACAAUAUAGGUU------ACUACUACUUACCGGGGCAUCCAUCUUCCGCUCCAUGCUCAUGCCAUUCCGCAUGGCGUGCUGCUGAUGAUGGGACAUGUCGCCCAUUUG ----..........(((.------..........))).((((..(((((.((.((..(((((.(((((......))))))))))..)).)).)))))((....))))))..... ( -37.00) >DroGri_CAF1 2811 102 - 1 ----GAGAGAUACAGAUU--------UGGAACUUACAGGUGCAUCCAUUUUGCGCUCCAUGCUCAUGCCGUUGCGCAUGGCAUGCUGAUGAUGAUGGGUCAUAUCGCCCAUUUG ----........(((...--------...........((((((.......)))))).(((((.(((((......))))))))))))).....(((((((......))))))).. ( -30.30) >DroEre_CAF1 2216 110 - 1 ----CGACGAUAUUGAUCCGUGUUAACACUACUUACCGGGGCAUCCAUCUUUCGCUCCAUGCUCAUGCCAUUCCGCAUGGCGUGCUGCUGAUGAUGGGACAUAUCGCCCAUUUG ----...((((((((..(((.((...........)))))..))((((((.((.((..(((((.(((((......))))))))))..)).)).))))))..))))))........ ( -34.60) >DroYak_CAF1 2223 110 - 1 ----UGACCAUAUUGAUCCAUGUGAGCACUACUUACCGGAGCAUCCAUCUUCCGCUCCAUGCUCAUGCCAUUCCGCAUGGCAUGCUGCUGAUGAUGGGACAUAUCGCCCAUUUG ----.........((.(((..(((((.....))))).))).))((((((.((.((..(((((.(((((......))))))))))..)).)).))))))................ ( -34.30) >DroMoj_CAF1 2715 105 - 1 ACCAGAGAGAGAGAG-UC--------UUCAACUUACCGGUGCAUCCAUUUUGCGCUCCAUGCUCAUGCCAUUGCGCAUGGCGUGCUGCUGAUGGUGGGUCAUGUCGCCCAUUUG (((.(.(((.(((..-..--------)))..))).).)))....(((((..((((.((((((.((......)).)))))).))))....)))))(((((......))))).... ( -32.50) >DroAna_CAF1 2031 100 - 1 ----GGUGAAAAUA-AU---------CAUUACUUACCGGAGCAUCCAUCUUGCGUUCCAUGCUCAUUCCAUUCCGCAUGGCAUGCUGGUGGUGAUGCGAUAUGUCGCCCAUCUG ----(((((.....-..---------(((((((.(((((.....)).....((((.((((((............)))))).)))).)))))))))).......)))))...... ( -32.34) >consensus ____GGACGAUAUAGAUC________CACUACUUACCGGAGCAUCCAUCUUGCGCUCCAUGCUCAUGCCAUUCCGCAUGGCAUGCUGCUGAUGAUGGGACAUAUCGCCCAUUUG .....................................((.((..(((((....((..(((((.(((((......))))))))))..))....)))))(......)))))..... (-23.90 = -23.82 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:44 2006