Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,536,830 – 11,536,946 |
Length | 116 |
Max. P | 0.773968 |
Location | 11,536,830 – 11,536,946 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 79.44 |
Mean single sequence MFE | -51.83 |
Consensus MFE | -32.54 |
Energy contribution | -33.65 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.77 |
Structure conservation index | 0.63 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11536830 116 + 20766785 CCAUC--UGGCCGGAUCCGGGAC-AGAGUCUGCCGCAAGGUGCUCCGGAAACCGUGUGCGACACCAUGCUGCCGUUCCACUCCGGCGGCAGUGUGCUACCCCAGAACAGUGUGUCGCCC .....--..(((((.((((((((-...))).(((....)))...)))))..))).))((((((((.((((((((........)))))))).(((.((.....)).)))).))))))).. ( -46.10) >DroVir_CAF1 1878 113 + 1 UCAGCUGCGGC------UCGGUGCGCUCUUUGCCUCAAGGUGCACCGGAAACGGUGUGCGACACGAUGCUGCCGUUCCAUGCCGGCGGCACGGUGCUGCCCGAGAACAGUGUCUCGCCC ...((.(((((------(((((((((.....(((....)))((((((....))))))))).)))..((((((((........))))))))))).)))))..((((......)))))).. ( -52.40) >DroPse_CAF1 4236 116 + 1 CUACC--UGGCUGGCGCCCAGUC-AGAGCUUGCCGCAAGGUGCACCGGAAACGGUGUGCGACACAAUGCUGCCGUUCCAUUCGGGUGGCAGUGUGCUGCCCCAGAACAGUGUCUCCCCC ....(--(((((((...))))))-)).((..(((....)))((((((....))))))))(((((...(((((((..(.....)..)))))))((.(((...))).)).)))))...... ( -54.40) >DroGri_CAF1 62 113 + 1 UCAUUGUUGGC------UGCGUGCGUGGCUUGCCACAAGGUGCACCGGAAACGGUAUGCGACACAAUGCUGCCGUUCCAUGCCGGCGGCACGGUGCUGCCCGAGAACAGUGUCUCCCCC .((((((((((------.((((((((((....))))...((..((((....))))..))).)))..((((((((........))))))))....)).)))....)))))))........ ( -46.90) >DroMoj_CAF1 77 119 + 1 UCAGCUGCGGCUGCCACUCGGUGUGGGCCUUGCCUCAAGGUGCACCGGAAACGGUGUGCGACACAAUGCUGCCGUUCCAUGCCGGCGGCUCGGUGCUGCCAGAGAACAGCGUCUCGCCU ...((.(((((.(((.....((((.(((((((...))))))((((((....)))))).).))))...(((((((........)))))))..))))))))..((((......)))))).. ( -54.10) >DroPer_CAF1 4148 116 + 1 CUACC--UGGCUGGCGCCCAGCC-AGAGCUUGCCGCAAGGUGCACCGGAAACGGUGUGCGACACAAUGCUGCCGUUCCAUUCGGGUGGCAGUGUGCUGCCCCAGAACAGUGUCUCCCCC ....(--(((((((...))))))-)).((..(((....)))((((((....))))))))(((((...(((((((..(.....)..)))))))((.(((...))).)).)))))...... ( -57.10) >consensus CCACC__UGGCUGGC_CCCGGUC_AGAGCUUGCCGCAAGGUGCACCGGAAACGGUGUGCGACACAAUGCUGCCGUUCCAUGCCGGCGGCACGGUGCUGCCCCAGAACAGUGUCUCCCCC ........(((....................))).....((((((((....))))))))(((((..((((((((........))))))))..((.((.....)).)).)))))...... (-32.54 = -33.65 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:43 2006