Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,532,513 – 11,532,615 |
Length | 102 |
Max. P | 0.729227 |
Location | 11,532,513 – 11,532,615 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 87.46 |
Mean single sequence MFE | -31.48 |
Consensus MFE | -20.76 |
Energy contribution | -22.72 |
Covariance contribution | 1.96 |
Combinations/Pair | 1.03 |
Mean z-score | -2.49 |
Structure conservation index | 0.66 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11532513 102 - 20766785 UGCCGCCAACGACUGAAAAGUCGGCGGAGAGCCGCU-CGAAAAGUGCUG----CGAAGCAUUUGAAGUGGGUUUUCAGUCGUGUAUCGAUAGU-AAGCCAAAAGACAA ..........((((....))))((((((((.(((((-....(((((((.----...)))))))..))))).))))).((((.....))))...-..)))......... ( -34.60) >DroSec_CAF1 2608 94 - 1 UGCCGCCAACGACUGAAAAGUCCGCGGAGAG-CGCU-CGAAAAGUGCUG----UGAAGCAUUUGAAGUGGGUUUUCAGACGUGUAUCGAUAGU-AAGCCA-------A ...((...(((.(((((((.(((((.(((..-..))-)...(((((((.----...)))))))...)))))))))))).)))....)).....-......-------. ( -26.90) >DroSim_CAF1 2597 94 - 1 UGCCGCCAACGACUGAAAAGUCCGCGGAGAG-CGCU-CGAAAAGUGCUG----CGAAGCAUUUGAAGUGGGUUUUCAGACGUGUAUCGAUAGU-AAGCCA-------A ...((...(((.(((((((.(((((.(((..-..))-)...(((((((.----...)))))))...)))))))))))).)))....)).....-......-------. ( -26.90) >DroEre_CAF1 2947 97 - 1 UGCCGCCAACGACUGAAAAGUCGGCGGAGAG-CGAU-GGAAAAGUGCUGAGAAGUAAGUAUUUGAAGUGG--UUUCAGUCGUGUAUCGAUAGUGAAGCCA-------A ..(((((...((((....)))))))))....-....-....(((((((........)))))))....(((--(((((((((.....))))..))))))))-------. ( -32.00) >DroYak_CAF1 2607 94 - 1 UGCCGCCAACGACUGAAAAGUCGACGGAGAG-CGCUUGAAAAAGUGCUG----GCAAGUAUUUGAAGUGG--UUUCAGUCUUGUAUCGAUAGUGAAGCCA-------A ((((.((..(((((....)))))..))..((-(((((....))))))))----)))...........(((--(((((.(.(((...))).).))))))))-------. ( -37.00) >consensus UGCCGCCAACGACUGAAAAGUCGGCGGAGAG_CGCU_CGAAAAGUGCUG____CGAAGCAUUUGAAGUGGGUUUUCAGUCGUGUAUCGAUAGU_AAGCCA_______A ..((((...(((((....))))))))).....((((.....(((((((........)))))))..))))(((((...((((.....))))....)))))......... (-20.76 = -22.72 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:41 2006