Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,512,003 – 11,512,102 |
Length | 99 |
Max. P | 0.698427 |
Location | 11,512,003 – 11,512,102 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -36.16 |
Consensus MFE | -23.94 |
Energy contribution | -25.67 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.13 |
Mean z-score | -1.65 |
Structure conservation index | 0.66 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11512003 99 + 20766785 GUCCAGCGCGGCGCACAAAGAUCGAUACAUUGUGCUCGACUAGCUUCGGCUGGAAUUCGCGCAGGGCGGUGAUGAUGCCUGCA-----CAGAGUAUUACA-UUUA ((((.((((((.((((((.(.......).))))))....(((((....)))))...)))))).))))((((.((((((((...-----.)).))))))))-)).. ( -38.70) >DroVir_CAF1 4598 101 + 1 GGCCCGCACGGCGCACAAAGAUCGAGACAUUGUGCUCGACCAGCUUGGGCUGGAACUCGCGCAGGGCCGUGAUGAUGCCUACA----ACAAAGUACGGUAAUUUA (((((.....((((.......(((((.(.....))))))(((((....))))).....)))).))))).......(((((((.----.....))).))))..... ( -39.20) >DroGri_CAF1 4825 105 + 1 GUCCGGCACGGCGCACAAAAAUCGACACGUUGUGCUCGACCAGCUUCGACUGGAAUUCGCGCAGGGCCGUAAUGAUACCUGUGACGAACAAAGUGAGGUGAUUUA (((.(((((((((..............))))))))).)))..(((((.(((....((((((((((............)))))).))))...))))))))...... ( -35.24) >DroEre_CAF1 4153 99 + 1 GUCCAGCGCGUCGCACAAAGAUCGAUACAUUGUGUUCGACUAGCUUUGGCUGGAACUCGCGCAGGGCGGUGAUGAUGCCUGCG-----CAGAUUAUUAGA-UUUA .((((((((...)).(((((.((((.((.....))))))....)))))))))))....(((((((.((.......))))))))-----)...........-.... ( -32.90) >DroYak_CAF1 4143 99 + 1 GUCCAGCGCGUCGCACAAAGAUCGAUACAUUGUGUUCGACAAGCUUCGGCUGGAACUCGCGCAGGGCGGUGAUGAUGCCUGUG-----CAAAGUAUUACA-UUUA ((((.(((((((((((((.(.......).)))))..)))).(((....))).......)))).)))).((((((.(((....)-----))...)))))).-.... ( -33.30) >DroAna_CAF1 4019 96 + 1 GGCCGGCGCGACGCACAAAGAUGGACACGUUGUGCUCCACCAGCUUGGGCUGGAACUCGCGCAGGGCGGUGAUGAUACCUGGG-----GAAUGAGUCACG-U--- .(((.((((((.(((((...(((....))))))))....(((((....)))))...))))))..))).(((((.((.((...)-----).))..))))).-.--- ( -37.60) >consensus GUCCAGCGCGGCGCACAAAGAUCGAUACAUUGUGCUCGACCAGCUUCGGCUGGAACUCGCGCAGGGCGGUGAUGAUGCCUGCG_____CAAAGUAUUACA_UUUA ((((.(((((..((((((...........))))))....(((((....)))))....))))).))))(((......))).......................... (-23.94 = -25.67 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:36 2006