| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,494,775 – 11,494,877 |
| Length | 102 |
| Max. P | 0.660124 |
| Location | 11,494,775 – 11,494,877 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -33.35 |
| Consensus MFE | -17.77 |
| Energy contribution | -17.52 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11494775 102 + 20766785 AGCCGCUU--CCACCAAGUUGGUUUCCUGAAC-CACUGCCAAGCUACUUUGCAGCUCUUGCAUCUUAACAAGGGCUGCCUGUACCUGCUGUGCAGCUGUUCCCGA ((((((((--.....))).)))))....((((-..((((..((((((...((((((((((........))))))))))..)))...)))..))))..)))).... ( -33.20) >DroPse_CAF1 28855 102 + 1 AGUAGCCU--CCACGAAGUUUGUCUCCUGCAC-CAGAGCGAUGCUGUUCUGUAGUUCCUGCAUCUUGACUUUCACUGCAUGGACCUGCUGGCCAGCAUUGCUAGC .((((...--..((((...))))...))))..-...((((((((((..(.((((.(((((((...((.....)).)))).))).)))).)..))))))))))... ( -33.50) >DroSec_CAF1 34690 105 + 1 AGCCGCCUUCCCACAAAGUUGGUUUCCUGAACCCACCGCCAAGCUACUUUGCAGCUCUUGCAUCUUAACGAGGGCUGCCUGUACCUGCUGUGCAGCUGUUCCCGA (((((.(((......))).)))))....((((.(((.((..((.(((...((((((((((........))))))))))..))).)))).))).....)))).... ( -28.20) >DroSim_CAF1 36325 102 + 1 AGCCGCUU--CCACCAAGUUGGUUUCCUGAAC-CACUGCCAAGCUACUUUGCAGCUCUUGCAUCUUAACGAGGGCUGCCUGUACCUGCUGUGCAGCUUUUCCCGA ....((((--......(((.(((((...))))-))))...))))......((((((((((........))))))))))((((((.....)))))).......... ( -29.30) >DroYak_CAF1 34968 102 + 1 AGCCGCUU--CCAACAAGUUGGUUUCCUGGAC-CACUGCCAAGCUACUUUGCAGCUCUUGCAUCUUAACGAGGGCUGCCUGUACCUGCUGAGCAGCUGGUCCCGA ((((((((--.....))).)))))..(.((((-((((((..((((((...((((((((((........))))))))))..)))...)))..)))).)))))).). ( -41.60) >DroPer_CAF1 26889 102 + 1 AGCAGCCU--CCACGAAGUUUGUCUCCUGCAC-CAGAGCGAUGCUGUUCUGUAGUGCCUGCAUCUUGACUUUCACUGCAUGGACCUGCUGGCCAGCAUUGCUAGC .((((...--..((((...))))...))))..-...((((((((((..(.((((..((((((...((.....)).)))).))..)))).)..))))))))))... ( -34.30) >consensus AGCCGCCU__CCACCAAGUUGGUUUCCUGAAC_CACUGCCAAGCUACUUUGCAGCUCUUGCAUCUUAACGAGGGCUGCCUGUACCUGCUGUGCAGCUGUUCCCGA ................(((((((..............)))).))).....((((((((((........))))))))))........(((....)))......... (-17.77 = -17.52 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:34 2006