Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,492,107 – 11,492,215 |
Length | 108 |
Max. P | 0.500000 |
Location | 11,492,107 – 11,492,215 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 77.87 |
Mean single sequence MFE | -25.33 |
Consensus MFE | -4.56 |
Energy contribution | -6.08 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.35 |
Mean z-score | -1.62 |
Structure conservation index | 0.18 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11492107 108 - 20766785 AGGAAUUCCUGGAAGAAAAAGAACUAAAGGCAAGUGCGAAAAAGCAAGGUGAUCAGGAUAUCGAACAGAAGUCCCAGAAACCAGAAGUAUCUGAGGUCGUAGCUGAGA (((....))).............((...(((...(((......)))....((((.((((.((.....)).))))((((.((.....)).)))).))))...))).)). ( -23.10) >DroSec_CAF1 32012 108 - 1 AGCAAGUCCUGGAAGAAAAAGAACUAGAGGCACGUGCUCAAAAACAAGGUGAUCAGGAUGUCGAAAAGAAGUCCGAGAAGCCAGAAGUAUCUGAGGUCGUAGCUGAGA (((..(((((((...........)))).)))(((..(((........(((..((.((((.((.....)).))))))...)))(((....))))))..))).))).... ( -25.00) >DroSim_CAF1 33660 108 - 1 AGCAAGUCCUGGAAGAAAAAGAACUAGAGGCUAGUGCACAAAAACAAGGUGAUCAGGAUGUGGAACAGAAGUCCCAGAAACCAGAAGUAUCUGAGGUCGUAGCUGAAA ..((.(((((((..........(((((...))))).(((.........))).))))))).))...(((..(.((((((.((.....)).)))).)).)....)))... ( -24.80) >DroEre_CAF1 33669 108 - 1 AACAAGCCCUUGAAGAAAAGCAACUAGAGGAUAGUGCACAAAAGCAAGCUGAUCAGAAUGUCGAACAGAAGCCGCAGAAACCAGAAGUAUCUGAGGUCGUAGCUGAGA ....(((.((((.......(((.(((.....)))))).......))))(((.((........)).)))..(((.((((.((.....)).)))).)))....))).... ( -19.84) >DroAna_CAF1 32635 108 - 1 AGCAGUCUCUGGAAGAGCAGAAAUUAGAUGCUAAGACCCAGAAACAAGCCGAAUCGGCGUCUGAAAAGAAAUCAGAGACGGCGGAAGUAUCUGAAGUGCUUGCCGAGG .((.((((((((...((((.........))))......((((.....((((...)))).))))........)))))))).))((((((((.....)))))).)).... ( -33.90) >consensus AGCAAGUCCUGGAAGAAAAAGAACUAGAGGCUAGUGCACAAAAACAAGGUGAUCAGGAUGUCGAACAGAAGUCCCAGAAACCAGAAGUAUCUGAGGUCGUAGCUGAGA .....(.(((...(((......((((.....))))............(((.....((((.((.....)).)))).....))).......))).))).).......... ( -4.56 = -6.08 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:33 2006