Locus 3394

Sequence ID 2R_DroMel_CAF1
Location 11,460,098 – 11,460,192
Length 94
Max. P 0.859349
window5547

overview

Window 7

Location 11,460,098 – 11,460,192
Length 94
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 78.15
Mean single sequence MFE -25.35
Consensus MFE -18.48
Energy contribution -19.62
Covariance contribution 1.14
Combinations/Pair 1.14
Mean z-score -1.48
Structure conservation index 0.73
SVM decision value 0.82
SVM RNA-class probability 0.859349
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11460098 94 + 20766785
GCU----UUCG-----CC-----CCC------ACAGCUGGAGCGCACCACCAAUUUGGAGCUAUGCUCCAUUCUGAUCCUCCUGGUGAUCAGCCUGAGCAUCUACACAUUCUAC
(((----(..(-----(.-----...------...))..))))((.(((......))).)).((((((....(((((((.....).))))))...))))))............. ( -25.40)
>DroVir_CAF1 13869 103 + 1
ACC----CUCU-AUCUCCCCUCACAU------AUAGCUGGAACGUGCCACCAAAUCGGAGCUGUGCAGCGCUUUGGCCCUGUUGGUGCUCUCGCUGAGCAUCUAUGCCUUCUAC
...----....-..............------...((((..(((.((..((.....)).))))).)))).....(((......(((((((.....)))))))...)))...... ( -24.30)
>DroSec_CAF1 1734 94 + 1
GCU----UUCG-----UC-----CCC------ACAGCUGGAGCGCACCACCAAUUUGGAGCUGUGCUCCAUUCUGAUCCUCCUGGUGAUCAGCCUGAGCAUCUACACAUUCUAC
(((----(...-----..-----...------.....(((((((((.(.((.....)).).)))))))))..(((((((.....).))))))...))))............... ( -27.50)
>DroSim_CAF1 1109 94 + 1
GCU----UUCG-----UC-----CCC------ACAGCUGGAGCGCACCACCAAUUUGGAGCUGUGCUCCAUUCUGAUCCUCCUGGUGAUCAGCCUGAGCAUCUACACAUUCUAC
(((----(...-----..-----...------.....(((((((((.(.((.....)).).)))))))))..(((((((.....).))))))...))))............... ( -27.50)
>DroEre_CAF1 3213 98 + 1
UCCUACCCUCC-----CC-----CCA------ACAGCUGGAGCGGACCACCAAGUUGGAGCUGUGCUCCAUCCUGAUCCUCCUGGUGAUCAGCCUGAGCAUCUACACAUUCUAC
...........-----..-----(((------((.((....))((....))..)))))....((((((....(((((((.....).))))))...))))))............. ( -23.70)
>DroYak_CAF1 1154 108 + 1
UCUUACCCCCCUUCC-UC-----CCACCCAUCACAGCUGGAGCGCACCACCAAGUCGGAGCUGUGCUCGAUCCUGAUCCUGCUGGUGAUCAGCCUGAGCAUCUACACAUUCUAC
...............-..-----.........((((((((......)).((.....))))))))(((((...(((((((.....).))))))..)))))............... ( -23.70)
>consensus
GCU____CUCG_____CC_____CCC______ACAGCUGGAGCGCACCACCAAUUUGGAGCUGUGCUCCAUUCUGAUCCUCCUGGUGAUCAGCCUGAGCAUCUACACAUUCUAC
...................................(((((((((((.(.((.....)).).))))))))...(((((((.....).))))))....)))............... (-18.48 = -19.62 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:29 2006