Locus 3393

Sequence ID 2R_DroMel_CAF1
Location 11,458,660 – 11,458,773
Length 113
Max. P 0.546557
window5546

overview

Window 6

Location 11,458,660 – 11,458,773
Length 113
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 80.29
Mean single sequence MFE -27.67
Consensus MFE -23.58
Energy contribution -23.47
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -1.00
Structure conservation index 0.85
SVM decision value 0.03
SVM RNA-class probability 0.546557
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11458660 113 + 20766785
UCGAAACUAAGAAAGAAAUAUUCGAUGAAGAGGAAAAAAAAUAGAAGUAGCCGCUUGGAGCGGAGCGCAAGCCUUCUGGACGCUUCAGCGGUUUCUGGUCAAA------UAUUGGGCUG
.............((.((((((.(((..(((((........((((((...((((.....)))).((....))))))))..(((....))).))))).))).))------))))...)). ( -28.20)
>DroSim_CAF1 8763 107 + 1
UAGAAACUAAG----AAAUAUUCGAUAAGGA--AAAAAAAAUAGAAGUAGCCGCUUGGAACGGAGCGCAAGCCUUCUGGACGCUUCAGCGGUUUCUGGUCAAA------UAUUGGGCUG
.........((----.((((((.(((.((((--(.......((((((...(((.......))).((....))))))))..(((....))).))))).))).))------))))...)). ( -24.70)
>DroYak_CAF1 8744 106 + 1
UAGGUAAUAAG----AAAU-------AAAGG--GGGAAAAAUAGAAGCAGCCGCUUGGAGUGGAGCGGAAGCCUUCUGGACGCUUCAGCGGUUUCUGGCCAAACACGAGUAUUGGGCUG
..(((....((----((((-------....(--(((.....(((((((..((((((......))))))..).))))))....))))....)))))).))).......(((.....))). ( -30.10)
>consensus
UAGAAACUAAG____AAAUAUUCGAUAAAGA__AAAAAAAAUAGAAGUAGCCGCUUGGAGCGGAGCGCAAGCCUUCUGGACGCUUCAGCGGUUUCUGGUCAAA______UAUUGGGCUG
.............................................((.(((((((.((((((..((....))(....)..))))))))))))).))((((..............)))). (-23.58 = -23.47 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:28 2006