Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,456,978 – 11,457,070 |
Length | 92 |
Max. P | 0.891907 |
Location | 11,456,978 – 11,457,070 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 71.63 |
Mean single sequence MFE | -17.01 |
Consensus MFE | -9.39 |
Energy contribution | -11.20 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.14 |
Mean z-score | -1.90 |
Structure conservation index | 0.55 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891907 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11456978 92 + 20766785 UAUAACUCAAACGAUCU-------UAACUGACUAAACACAUCUAGGAAUACUGAAUGAUGAAUGAAUGAAUAAGAAACGUAAUUCGUUUGUGUUCAGUA ..............(((-------((..((........))..))))).((((((((.(..(((((((..............)))))))..))))))))) ( -16.84) >DroSec_CAF1 7063 69 + 1 UAUAACGCAAACGAUCU-------UAAC-----------------------UGAAUGAUGAAUGAAUGAAUAAGAAACCUUAUUCGUUUGUGUUCAGUA .................-------..((-----------------------(((((.....(..((((((((((....))))))))))..)))))))). ( -17.40) >DroSim_CAF1 7084 86 + 1 UAUAA------CGAUCU-------UAACUGACUAAACACAUCUAGGAAUACUGAAUGAUGAAUGAAUGAAUAAGAAACCUUAUUCGUUUGUGUUCAGUA .....------...(((-------((..((........))..))))).((((((((.....(..((((((((((....))))))))))..))))))))) ( -20.30) >DroYak_CAF1 7087 97 + 1 UAUAU--CUACCAAUAUGACUGACCAACUGACUAAACAGAACUAGGAAUAUUCAGUGAUUAAUGAAUGAAUAAGAAAGUUUAUUCGUUUGAGUGCCGUA .....--.(((((..((.(((((((..(((......))).....)).....))))).)).(((((((((((......))))))))))))).)))..... ( -13.50) >consensus UAUAA__CAAACGAUCU_______UAACUGACUAAACACAUCUAGGAAUACUGAAUGAUGAAUGAAUGAAUAAGAAACCUUAUUCGUUUGUGUUCAGUA ................................................((((((((.....(((((((((((((....))))))))))))))))))))) ( -9.39 = -11.20 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:25 2006