Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,236,414 – 2,236,509 |
Length | 95 |
Max. P | 0.943110 |
Location | 2,236,414 – 2,236,509 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 96.14 |
Mean single sequence MFE | -45.47 |
Consensus MFE | -42.81 |
Energy contribution | -42.88 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -2.17 |
Structure conservation index | 0.94 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2236414 95 + 20766785 AGCAGCUGCAGAGGCUGGCGGGGAAUCCCCCUCAGAACCUGCCGCUGGCGCAUCCUCCGCCCCACCAGCGGCCGCCUCGGAAGGAUCCGCCUCAC .((....)).(((((.(((((((....)))).........((((((((.((.......))....)))))))).)))..(((....)))))))).. ( -43.00) >DroSec_CAF1 3004 95 + 1 AGCAGCUGCAGAGGCUGGCGGGGAAUCCCCCUCAGAACCUGCCGCUGGCGCAUCCUCCGCCCCGCCAGCGGCCGCCUCGGAAGGAUCCGCCUCAC .((....)).(((((.(((((((....)))).........((((((((((............)))))))))).)))..(((....)))))))).. ( -47.10) >DroSim_CAF1 3002 95 + 1 AGCAGCUGCAGAGGCUGGCGGGGAAUCCCCCUCAGAACCUGCCGCUGGCGCAUCCUCCGCCCCGCCAGCGGCCGCCUCGGAAGGAUCCGCCUCAC .((....)).(((((.(((((((....)))).........((((((((((............)))))))))).)))..(((....)))))))).. ( -47.10) >DroEre_CAF1 3078 95 + 1 AGCAGCUGCAGAGGCUGGCGGGGAUUCCGCCUCGGCACCUGCCGCUGGUGCAUCCUCCGCCCCACCAGCGGCCGCCUCGGAAGGAUCUGCCUCAC .((....)).(((((.(((((.....)))))..(((....((((((((((............)))))))))).)))((....))....))))).. ( -44.70) >consensus AGCAGCUGCAGAGGCUGGCGGGGAAUCCCCCUCAGAACCUGCCGCUGGCGCAUCCUCCGCCCCACCAGCGGCCGCCUCGGAAGGAUCCGCCUCAC .((....)).(((((.(((((((....)))).........((((((((((............)))))))))).)))..(((....)))))))).. (-42.81 = -42.88 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:54 2006