Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,195,441 – 2,195,538 |
Length | 97 |
Max. P | 0.987534 |
Location | 2,195,441 – 2,195,538 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 66.80 |
Mean single sequence MFE | -33.56 |
Consensus MFE | -14.75 |
Energy contribution | -15.15 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.45 |
Mean z-score | -2.34 |
Structure conservation index | 0.44 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2195441 97 + 20766785 CAACGUGGCUUUCAGCUAUCAACGGGCACAAUGCUCUCUAGUUUGGAGCAGUUGAAAGUCAUCGAAGGCCAGGCAACGAAGGCCAAGACCACGGCCA ...((((((((((((((......(....)...(((((.......))))))))))))))))).))..((((.(....)...((......))..)))). ( -34.00) >DroSec_CAF1 19509 97 + 1 CAACGUGGCUUUCAGAUGUCAACGAGCUCCAUGCUUUCCAGUUUGGAGCAGUUGAAAGUCAUCGAAGGCCAGGCUACGAAGGCGAAGUCCAAGGCCA ...(.((((((((.(((((((((..((((((.(((....))).)))))).)))))....)))))))))))).).......(((..........))). ( -37.80) >DroEre_CAF1 21350 97 + 1 CAACGGUGCUUUCUGUCCUCAACGGGAUCCAUGCUCUCCAAUUUGGAGCAGUUGAAAGCCAUUGAAGGCCAGGCAACGAAGUCCAAGUCCAACACCA ....((.(((((.((((.(((((((...)).((((((.......)))))))))))..(((......)))..))))..)))))))............. ( -24.10) >DroYak_CAF1 19349 97 + 1 CAACGGGGCUUUUUGCCCCCAACGGGCUCCAUGCUCUCCAAUUUGGAGCAGUUGAAAAUCAUUGAAGGCCAGGUAACGAAGGCCAACUCCAUGACCA ....(((((.....)))))((((..((((((............)))))).))))....((((.((.((((.(....)...))))...)).))))... ( -33.70) >DroAna_CAF1 25171 73 + 1 GAGAGGGGCCUGAAG------GCGGGCUAUGCGCCGCCUAGUCUGGACAAGCCCAUGGCGGUGGACGGCAAGGG--------C----------CCCA ....(((((((..((------((((((...)).)))))).(.(((..((.(((...)))..))..))))..)))--------)----------))). ( -38.20) >consensus CAACGGGGCUUUCAGCCCUCAACGGGCUCCAUGCUCUCCAGUUUGGAGCAGUUGAAAGUCAUCGAAGGCCAGGCAACGAAGGCCAAGUCCAAGACCA ......(((((((.....(((((.(((.....)))((((.....))))..)))))........))))))).(((...................))). (-14.75 = -15.15 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:53 2006