Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,434,070 – 11,434,170 |
Length | 100 |
Max. P | 0.992538 |
Location | 11,434,070 – 11,434,170 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 83.66 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -20.10 |
Energy contribution | -19.98 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -2.59 |
Structure conservation index | 0.85 |
SVM decision value | 2.33 |
SVM RNA-class probability | 0.992538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11434070 100 - 20766785 CGAUGCCCUAGGCCAAUUCCAAAUCCAAAUCCAAUUCCUAUUCC-UAUUCCUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA .(((.((((((.((((((((((........((((..........-.....................)))).......))).))))))).)))))))))... ( -23.84) >DroSec_CAF1 52922 100 - 1 CGAUGCCCUAUGCCAAUUCCAAUUCCAAAUCCAAUUCCUAUUCC-UAUUCCUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA .(((.(((((..((((((((((((......((((..........-.....................)))).....))))).)))))))..))))))))... ( -24.08) >DroSim_CAF1 42539 95 - 1 CGAUGCCUUAGGCCAAUUCCAAUUCCAA------UUCCUAUUCCUUAUUCUUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA .(((.((((((.((((((((((((..((------((((..............................)).))))))))).))))))).)))))))))... ( -21.01) >DroEre_CAF1 49728 81 - 1 UGAUGCCCUAGGCCAAUUCCAAU-------------------CC-UAUUCCUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA ((((.((((((.(((((((((((-------------------..-.(((((.................)).)))..)))).))))))).)))))))))).. ( -23.83) >DroYak_CAF1 48443 76 - 1 UGAUGCCCUAGGCCAAUUCCAA-------------------------UUCCUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA ((((.((((((.((((((((((-------------------------((...((((((.........))).))).))))).))))))).)))))))))).. ( -25.90) >consensus CGAUGCCCUAGGCCAAUUCCAAUUCCAA______UUCCUAUUCC_UAUUCCUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA .(((.((((((.((((((((((............................(((..(((.........)))....)))))).))))))).)))))))))... (-20.10 = -19.98 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:01 2006