Locus 3377

Sequence ID 2R_DroMel_CAF1
Location 11,433,478 – 11,433,572
Length 94
Max. P 0.962529
window5516

overview

Window 6

Location 11,433,478 – 11,433,572
Length 94
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -24.76
Consensus MFE -21.14
Energy contribution -21.46
Covariance contribution 0.32
Combinations/Pair 1.10
Mean z-score -1.87
Structure conservation index 0.85
SVM decision value 1.54
SVM RNA-class probability 0.962529
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11433478 94 + 20766785
ACAUUUUUUGUUUGCCCUUUUGGUGGGCGAAUUUAUGAAGACAUGAAAUGACUUUGAUGUUUUUACUGCUGCAA--CUAUGCGAAGAUGUUUCCCG
((((((((.((((((((.......))))))))...(((((((((.(((....))).))))))))).....(((.--...)))))))))))...... ( -24.50)
>DroSec_CAF1 52319 93 + 1
ACAU-UUUUGUUUGCCCUUUUGGUGGGCGAAUUUAUAAAGACAUGAAAUGACUUUGAUGUUUUUGCUGCUGCAA--CUAUGCGAAGAUGUUUCCCG
((((-((((((((((((.......))))))......((((((((.(((....))).))))))))((....))..--....))))))))))...... ( -25.00)
>DroSim_CAF1 41948 93 + 1
ACAU-UUUUGUUUGCCCUUUUGGUGGGCGAAUUUAUGAAGACAUGAAAUGACUUUGAUGUUUUUGCUGCUGCAA--CUAUGCGAAGAUGUUUCCCG
((((-((((((((((((.......))))))......((((((((.(((....))).))))))))((....))..--....))))))))))...... ( -25.40)
>DroEre_CAF1 49142 94 + 1
ACAUUUUUUGUUUGCCCUUUUGGUGGACGAAAUUAUGAAGACAUGAAAUGACUUUGAUGUUUUUGCUGCUGCAA--CUAUGCGAAGAUGUUUUCCG
.....(((((((..((.....))..)))))))....((((((((.......(((((.(((..((((....))))--..)))))))))))))))).. ( -23.71)
>DroYak_CAF1 47822 96 + 1
ACAUUUUUUGUUUGCCCUUUUGGUGGGCAAAUUUAUGAAGACAUGAAAUGACUUUGAUGUUUUUGCUGCUGCAAUGCGAUGCGAAGAUGUUUCCCG
((((((((.((((((((.......))))))))....((((((((.(((....))).))))))))(((((......)))..))))))))))...... ( -25.20)
>consensus
ACAUUUUUUGUUUGCCCUUUUGGUGGGCGAAUUUAUGAAGACAUGAAAUGACUUUGAUGUUUUUGCUGCUGCAA__CUAUGCGAAGAUGUUUCCCG
((((((((.((((((((.......))))))))...(((((((((.(((....))).))))))))).....(((......)))))))))))...... (-21.14 = -21.46 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:00 2006