Locus 3375

Sequence ID 2R_DroMel_CAF1
Location 11,432,031 – 11,432,137
Length 106
Max. P 0.632216
window5513

overview

Window 3

Location 11,432,031 – 11,432,137
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 94.33
Mean single sequence MFE -21.56
Consensus MFE -17.44
Energy contribution -17.44
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.81
SVM decision value 0.20
SVM RNA-class probability 0.632216
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11432031 106 + 20766785
AAUCCACCCUCAUAAAUCAUAAGUUAGCCCAGUUUAUGGGCCCCAAUAAACUUGUCAUGUAUUUCAUGCACUGGGCGCGGGGAUUUUUGUACAACAAAUUAAAUAU
(((((.((..................(((((.....)))))((((........((((((.....)))).))))))...)))))))((((.....))))........ ( -21.90)
>DroSec_CAF1 50951 106 + 1
AAUCCACCCUCAUAAAUCAUAACUUAGCCCAGUUUAUGGGCCCCAAUAAACUUGUCAUGUAUUUCAUGCACUGGGCGCGGGGAUUUUCUUACAACAAAUUAAAUAU
(((((.((..................(((((.....)))))((((........((((((.....)))).))))))...)))))))..................... ( -21.40)
>DroSim_CAF1 40571 106 + 1
AAUCCACCCUCAUAAAUCAUAACUUAGCCCAGUUUAUGGGCCCCAAUAAACUUGUCAUGUAUUUCAUGCACUGCGCGCGGGGAUUUUCGUACAACAAAUUAAAUAU
(((((.(((.(...............(((((.....)))))............((((((.....)))).))...).).)))))))..................... ( -18.80)
>DroEre_CAF1 47686 104 + 1
AAUCCACCCUCGUAAAUCAUAACUUAGCCCAGUUUAUGGGCCCCAAUAAACUUGUCAUGU-UUUCAUGCACAGUGCGCGGG-GAUUUUGUAAAACAAAUUAAAUAU
......(((.((((............(((((.....)))))..........((((((((.-...)))).)))))))).)))-...((((.....))))........ ( -24.20)
>DroYak_CAF1 46391 105 + 1
AAUCCACCCUCAUAAAUCAUAACUUAGCCCAGUUUAUGGGCCCCAAUAAACUUGUCAUGU-UUUCAUGCACUGAGCGCGGGGGCUUUUGUAAAACAAAUUAAAUAU
......(((((...............(((((.....))))).........(((((((((.-...)))).)).)))...)))))..((((.....))))........ ( -21.50)
>consensus
AAUCCACCCUCAUAAAUCAUAACUUAGCCCAGUUUAUGGGCCCCAAUAAACUUGUCAUGUAUUUCAUGCACUGGGCGCGGGGAUUUUUGUACAACAAAUUAAAUAU
......(((.(...............(((((.....)))))............((((((.....)))).)).....).)))......................... (-17.44 = -17.44 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:57 2006