Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,427,223 – 11,427,313 |
Length | 90 |
Max. P | 0.600184 |
Location | 11,427,223 – 11,427,313 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 79.24 |
Mean single sequence MFE | -40.97 |
Consensus MFE | -25.32 |
Energy contribution | -25.40 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.51 |
Structure conservation index | 0.62 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600184 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11427223 90 + 20766785 -GCGUGGGCUGGGC---UAUUGCACGAAGCUCCUGGGUCGG--AGGA----------------CGUUCCAUGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG -...(((((.(((.---(((((((((.(((.(((.(((((.--.((.----------------(((...)))))..))))).))).))).))..))))))).))).))))). ( -41.20) >DroSec_CAF1 41861 92 + 1 -GCGUGGGCUGGGC---UGUUGCACGGAGCUCCUGGGUCGGGGAGGA----------------CGUUCCAUGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG -...(((((.(((.---(((((((((.(((.(((.(((((((.(((.----------------....)).).))..))))).))).))).))..))))))).))).))))). ( -43.40) >DroSim_CAF1 35850 92 + 1 -GCGUGGGCUGGGC---UGUUGCACGGAGCUCUUGGGUCGGGGUGGA----------------CGUUCCAUGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG -...(((((.(((.---(((((((((.((((((..((((((.((((.----------------....)))).)))))..)..))).))).))..))))))).))).))))). ( -45.80) >DroEre_CAF1 42986 90 + 1 -GCAUGGGUUGGGC---UGUUGCACACCACUUCUGGGUCGG--AGGA----------------CGUACCACGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG -...(((((.(((.---(((((((((.((((((..(((((.--.((.----------------((.....))))..))))))))))).))....))))))).))).))))). ( -37.70) >DroYak_CAF1 41597 90 + 1 -GCAUGGGUUGGGC---UGUUGCACACCACUUCUGGGUCGG--AGGA----------------CGUACCACGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG -...(((((.(((.---(((((((((.((((((..(((((.--.((.----------------((.....))))..))))))))))).))....))))))).))).))))). ( -37.70) >DroPer_CAF1 45562 110 + 1 GACGUGGGAUGGUCUGGUGUUGCACGGUGAUUGCGAGUGGGUUAUGGCUGUAUGCGUCUCCUGUGUCCUGUGCCCGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUCGCC-- ...(((((..((.(.((.(.((((((((.((.((......)).)).)))))..))).).))...).))....)))))(((.((((((((((....))))).))))).)))-- ( -40.00) >consensus _GCGUGGGCUGGGC___UGUUGCACGGAGCUCCUGGGUCGG__AGGA________________CGUUCCAUGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG .....((((.(((....(((((((..............(((...((.....................))...)))(((((......)))))...))))))).))).)))).. (-25.32 = -25.40 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:56 2006