Locus 3373

Sequence ID 2R_DroMel_CAF1
Location 11,427,092 – 11,427,185
Length 93
Max. P 0.622876
window5511

overview

Window 1

Location 11,427,092 – 11,427,185
Length 93
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 84.42
Mean single sequence MFE -27.32
Consensus MFE -19.34
Energy contribution -20.17
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -2.39
Structure conservation index 0.71
SVM decision value 0.18
SVM RNA-class probability 0.622876
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11427092 93 - 20766785
CCAUUCU--CUGGGCAUUUUUAAUGCUUUUAAUUUUUGCUGCGCCAACGAACA-------GGGA----AGCACGGAAUGAGCACUAAAAGUAAGCCCAAAAAAACA
.......--.((((((((((((.(((((....((..((((.(.((........-------))).----))))..))..))))).)))))))..)))))........ ( -24.50)
>DroPse_CAF1 42910 105 - 1
CCCUUUCUGUUGGGCAUUUUUAAUGCUUUUAAUUUUUGCUGCGCCACCGAACAACGGGAGGGGAAAAGAGCAGGGAAUGAGCACUAAAAGUAAGCCCAAA-AAAAA
.........(((((((((((((.(((((....((((((((.(.((.(((.....)))..)).).....))))))))..))))).)))))))..)))))).-..... ( -32.00)
>DroEre_CAF1 42858 92 - 1
CCCUUCC--CUGGGCAUUUUUAAUGCUUUUAAUUUUUGCUGCGCCAACGAACG-------GGGA----AGCACGGAAUGAGCACUAAAAGUAAGCCCAAA-AAACA
.......--.((((((((((((.(((((....((..((((.(.((.......)-------).).----))))..))..))))).)))))))..)))))..-..... ( -26.40)
>DroYak_CAF1 41469 92 - 1
CCCUUCC--CUGGGCAUUUUUAAUGCUUUUAAUUUUUGCUGCGCCAACGGACA-------GGGA----AGCACGGAACGAGCACUAAAAGUAAGCCCAAA-AAACA
.......--.((((((((((((.(((((....((..((((.(.((........-------))).----))))..))..))))).)))))))..)))))..-..... ( -23.80)
>DroAna_CAF1 30368 88 - 1
CCGCUCC--UUGGGCCUUUUUAAUGCUUUUAAUUUUUGCUGCGCCGCCGGAGA-------GC-------GCCCGGAAUGAGCACUAAAAGUAAGCCCAAA-AAAA-
.......--((((((.((((((.(((((.....(((((..(((((......).-------))-------)).))))).))))).))))))...)))))).-....- ( -25.20)
>DroPer_CAF1 45376 105 - 1
CCCUUUCUGUUGGGCAUUUUUAAUGCUUUUAAUUUUUGCUGCGCCACCGAACAACGGGAGGGGAAAAGAGCAGGGAAUGAGCACUAAAAGUAAGCCCAAA-AAAAA
.........(((((((((((((.(((((....((((((((.(.((.(((.....)))..)).).....))))))))..))))).)))))))..)))))).-..... ( -32.00)
>consensus
CCCUUCC__CUGGGCAUUUUUAAUGCUUUUAAUUUUUGCUGCGCCAACGAACA_______GGGA____AGCACGGAAUGAGCACUAAAAGUAAGCCCAAA_AAAAA
..........((((((((((((.(((((....((..((((...((................)).....))))..))..))))).)))))))..)))))........ (-19.34 = -20.17 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:55 2006