Locus 3371

Sequence ID 2R_DroMel_CAF1
Location 11,415,840 – 11,415,947
Length 107
Max. P 0.852609
window5508

overview

Window 8

Location 11,415,840 – 11,415,947
Length 107
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 97.13
Mean single sequence MFE -29.10
Consensus MFE -27.05
Energy contribution -27.05
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.93
SVM decision value 0.79
SVM RNA-class probability 0.852609
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11415840 107 - 20766785
CAUCGGUGAAUCUCUUUUUCAUUUCCUUUAUGGGCAACCGCAUAUGGUAUGGUAUGGCCGUAGCAUAUAGUUAGUGCCGCCGCCCGCCCUCUUUGGAAAAUUUCCAA
....((((((.......))))(((((.....((((.((((....)))).......(((.(..((((.......))))..).))).)))).....)))))....)).. ( -29.10)
>DroSec_CAF1 30356 102 - 1
CAUCGGUGAAUCUCUUUUUCAUUUCCUUUAUGGGCAACCGCAUAUGG-----UAUGGCCGUAGCAUAUAGUUAGUGCCGCCGCCCGCCCUCUUUGGAAAAUUUCCAA
....((((((.......))))(((((.....((((.((((....)))-----)..(((.(..((((.......))))..).))).)))).....)))))....)).. ( -29.10)
>DroEre_CAF1 31554 102 - 1
CAUCGGUGAAUCUCUUUUUCAUUUCCUUUAUGGGCAACCGCAUAUGG-----UAUGGCCGUAGCAUAUAGUUAGUGCCGCUGCCCGCCCUCUUUGGAAAAUUUCCAA
....((((((.......))))(((((.....((((.((((....)))-----)..(((.(..((((.......))))..).))).)))).....)))))....)).. ( -29.10)
>DroYak_CAF1 30088 102 - 1
CAUCGGUGAAUCUCUUUUUCAUUUCCUUUAUGGGCAACCGCAUAUGG-----UAUGGCCGUAGCAUAUAGUUAGUGCCGCCGCCCGCCCUCUUUGGAAAAUUUCCAA
....((((((.......))))(((((.....((((.((((....)))-----)..(((.(..((((.......))))..).))).)))).....)))))....)).. ( -29.10)
>consensus
CAUCGGUGAAUCUCUUUUUCAUUUCCUUUAUGGGCAACCGCAUAUGG_____UAUGGCCGUAGCAUAUAGUUAGUGCCGCCGCCCGCCCUCUUUGGAAAAUUUCCAA
....((((((.......))))(((((.....((((..(((....)))........(((.(..((((.......))))..).))).)))).....)))))....)).. (-27.05 = -27.05 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:53 2006