Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,415,316 – 11,415,420 |
Length | 104 |
Max. P | 0.614070 |
Location | 11,415,316 – 11,415,420 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 92.79 |
Mean single sequence MFE | -29.55 |
Consensus MFE | -23.60 |
Energy contribution | -24.22 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.08 |
Mean z-score | -1.72 |
Structure conservation index | 0.80 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11415316 104 - 20766785 CUCGACGUUUCACUUUUGAGAAGGGUAGCCACCAAAUUGGGGUCACCUUUUCAGGGUGGCAUCCUUAUAUUGCAAGUCUUCGUUUGCCAUGAUCAAUUUUAUAA (((((..........)))))((((((.((((((.....(((....)))......)))))))))))).(((.(((((......))))).)))............. ( -28.20) >DroSec_CAF1 29854 104 - 1 CUCGGCGUUUCACUUUUGAGAAGGGUGGCCACCAAAUUGGGGUCACCUUUUCAGGGUGGCAUCCUUAUAUUGCAAGUCUUCGUUUGCCAUGAUCAAUUUUAUAA ...((((...((((((.(((((((.(((((.((.....))))))))))))))))))))(((.........)))...........))))................ ( -32.30) >DroEre_CAF1 31060 104 - 1 GUGAGCGUUUCACUUAUGAGAAGGGUAGCCACCGAAUUGGGGUCACCUUUUCAGGGUGGCAUCCUUGUAUUGCAAGUCUUCGUUUGCCAUGAUCAAUUUUAUAA (..((((....((((..((.((((((.(((((((((..((.....))..)))..))))))))))))...))..))))...))))..)................. ( -32.10) >DroYak_CAF1 29636 103 - 1 CUCGGCGUUUCACUUG-GAGAUGGGUAGCCCCCAAAUUUGGGUCACCUUUUCAGGGUGGCAUCCUUGUAUUGCAAGUUUUCGUUUGCUAUGAUCAAUUUUAUAA ...((.((.(((((..-((((.((((..(((........)))..))))))))..))))).)))).......(((((......)))))(((((......))))). ( -25.60) >consensus CUCGGCGUUUCACUUUUGAGAAGGGUAGCCACCAAAUUGGGGUCACCUUUUCAGGGUGGCAUCCUUAUAUUGCAAGUCUUCGUUUGCCAUGAUCAAUUUUAUAA ...((((....((((.(((.((((((.((((((.....(((....)))......))))))))))))...))).))))...)))).................... (-23.60 = -24.22 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:52 2006