Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,195,201 – 2,195,302 |
Length | 101 |
Max. P | 0.859995 |
Location | 2,195,201 – 2,195,302 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 66.21 |
Mean single sequence MFE | -27.08 |
Consensus MFE | -9.05 |
Energy contribution | -8.38 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.42 |
Mean z-score | -2.06 |
Structure conservation index | 0.33 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2195201 101 - 20766785 CUGGGCAGGAAACCUCGUUUUUUCAGAUAGACAACUGGCGACUCCCAGUUCUUAAUCAAAUUCUGCACGACCUCAUUAUAGGCAUGC----AAUGGGUCGUCUGU ....((((((((........)))).(((.((.((((((......)))))).)).))).....))))((((((.((((.((....)).----)))))))))).... ( -26.60) >DroVir_CAF1 19882 90 - 1 CUGGGCAGGUAGCCCAGUUGUCGCAGAUAUAUAAUCGGGGACUCCCAGUUCUUGAUUAAAUCGCGCACAAUCUCAUUGUAGUUA---UGAA------------AG ((((((.....))))))(((((((.(((...(((((((((((.....))))))))))).)))))).))))..((((.......)---))).------------.. ( -30.30) >DroGri_CAF1 23217 90 - 1 CUGGGCAAAUAGCCCAGCUGGCGCAGAUACACAAUUGGUGACUCCCAAUUCUUGAUCAAAUCACGCACAAUAUCAUUGUAAUUG---UGUA------------AG ((((((.....))))))...((((((.((((.((((((......))))))..((((...)))).............)))).)))---))).------------.. ( -23.10) >DroSec_CAF1 19275 101 - 1 CUGGGCAGGAAACCUCGUUUUUUCAGAUAGAAAACUGGAUACUCCCAGUUCCUAAUCAAAUUUUGGACGACCUCAUUAUAGGCCUGC----AAUGGGUCGUCUGU (((((.((....((..(((((((.....))))))).))...)))))))................((((((((.((((.((....)).----)))))))))))).. ( -29.20) >DroYak_CAF1 19112 101 - 1 CUGGGCAGAAACCCUUGUUUCUUCAGAUACACGACUGGAGACUCCCAGUUCUUUAUCAAAUUCUGCACGACCUCAUUAUAAGCCUGU----AAUGGGUCGUCCUU ..((((((((.....((......))((((.(.((((((......)))))).).))))...))))))((((((.(((((((....)))----)))))))))))).. ( -33.60) >DroMoj_CAF1 22460 93 - 1 UUGGGCAGAUAACCCAAUUGCCGCAGAUAUACAAUCGGUGACUCCCAGUUCUUGAUUAAGUCCCGCACAAUUGCAUUGUAGUUAUUGUGAA------------AG (((((.......)))))....(((((...((((((.((.((((...............))))))(((....)))))))))....)))))..------------.. ( -19.66) >consensus CUGGGCAGAAAACCCAGUUGUCGCAGAUACACAACUGGAGACUCCCAGUUCUUGAUCAAAUCCCGCACAACCUCAUUAUAGGCAUG_________________AG ..(((.......)))..........(((....((((((......))))))....)))................................................ ( -9.05 = -8.38 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:52 2006