Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,414,995 – 11,415,126 |
Length | 131 |
Max. P | 0.990052 |
Location | 11,414,995 – 11,415,086 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 81.51 |
Mean single sequence MFE | -28.73 |
Consensus MFE | -19.98 |
Energy contribution | -21.35 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.09 |
Mean z-score | -2.62 |
Structure conservation index | 0.70 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11414995 91 + 20766785 AUGUCUAAAA--------AAAAAUAUAUCUGUUGGUGCUGACUGGUGACCCCAUUUGUGGGGUGACCCUGCCAUGUGGUGACACCUUAACAGUUAGCCA ..........--------................(.((((((((((.((((((....)))))).))........(((....))).....))))))))). ( -30.10) >DroSec_CAF1 29540 88 + 1 AUGUCUAAAA--------GAA---AUAUCUGUUGGUGCUGGCUGGUGACCCCAUUUGUGGGGUGACCCCGCCAUGUGGUGACACCUUAACAGUUAGCCA ..........--------...---.((.(((((((...((((.(((.((((((....)))))).)))..)))).(((....))).))))))).)).... ( -32.10) >DroEre_CAF1 30760 78 + 1 AUGCCUUUAA--------AAA---AUAUCUGUUG----------GUGACCCCAUUUGUGGGGUGACCCUGCCAUGUGGAGACACCUUUACUGUUAGCCA ..........--------...---.........(----------((.((((((....)))))).)))(((.((.((((((....)))))))).)))... ( -22.00) >DroYak_CAF1 29320 92 + 1 AUGCCUUUAAAUGUCUUAAAA---AUAUUUGUUGGUGCU----GGUGACCCCAUUUAUGGGGUGACCCUGCCAUGUGGAGACACCUUUACAGUUAGCCA ..(((..(((((((.......---)))))))..)))(((----(((.((((((....)))))).)))(((....(((....))).....)))..))).. ( -30.70) >consensus AUGCCUAAAA________AAA___AUAUCUGUUGGUGCU____GGUGACCCCAUUUGUGGGGUGACCCUGCCAUGUGGAGACACCUUAACAGUUAGCCA .........................((.((((.((((......(((.((((((....)))))).))).((((....)))).))))...)))).)).... (-19.98 = -21.35 + 1.37)
Location | 11,414,995 – 11,415,086 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.51 |
Mean single sequence MFE | -26.78 |
Consensus MFE | -18.35 |
Energy contribution | -19.23 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.05 |
Mean z-score | -2.74 |
Structure conservation index | 0.69 |
SVM decision value | 2.19 |
SVM RNA-class probability | 0.990052 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11414995 91 - 20766785 UGGCUAACUGUUAAGGUGUCACCACAUGGCAGGGUCACCCCACAAAUGGGGUCACCAGUCAGCACCAACAGAUAUAUUUUU--------UUUUAGACAU .......(((((..(((((.......((((..(((.((((((....)))))).))).))))))))))))))..........--------.......... ( -27.11) >DroSec_CAF1 29540 88 - 1 UGGCUAACUGUUAAGGUGUCACCACAUGGCGGGGUCACCCCACAAAUGGGGUCACCAGCCAGCACCAACAGAUAU---UUC--------UUUUAGACAU .......(((((..(((((.......((((..(((.((((((....)))))).))).))))))))))))))....---...--------.......... ( -31.01) >DroEre_CAF1 30760 78 - 1 UGGCUAACAGUAAAGGUGUCUCCACAUGGCAGGGUCACCCCACAAAUGGGGUCAC----------CAACAGAUAU---UUU--------UUAAAGGCAU ..(((......((((((((((((....))...(((.((((((....)))))).))----------)...))))))---)))--------)....))).. ( -23.70) >DroYak_CAF1 29320 92 - 1 UGGCUAACUGUAAAGGUGUCUCCACAUGGCAGGGUCACCCCAUAAAUGGGGUCACC----AGCACCAACAAAUAU---UUUUAAGACAUUUAAAGGCAU ..(((.........(((((((((....)).))(((.((((((....)))))).)))----.))))).........---.((((((...))))))))).. ( -25.30) >consensus UGGCUAACUGUAAAGGUGUCACCACAUGGCAGGGUCACCCCACAAAUGGGGUCACC____AGCACCAACAGAUAU___UUU________UUAAAGACAU ((.((..(((((...(((....)))..)))))(((.((((((....)))))).))).....................................)).)). (-18.35 = -19.23 + 0.87)
Location | 11,415,027 – 11,415,126 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 90.69 |
Mean single sequence MFE | -30.62 |
Consensus MFE | -27.77 |
Energy contribution | -28.27 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.04 |
Mean z-score | -1.80 |
Structure conservation index | 0.91 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11415027 99 + 20766785 ACUGGUGACCCCAUUUGUGGGGUGACCCUGCCAUGUGGUGACACCUUAACAGUUAGCCAAGUGGCCAGACUAUUUCCCUCCACGAGAUGACCCCAUCCU ...(((.((((((....)))))).)))(((((((.(((((((.........)))).))).)))).))).................((((....)))).. ( -32.10) >DroSec_CAF1 29569 98 + 1 GCUGGUGACCCCAUUUGUGGGGUGACCCCGCCAUGUGGUGACACCUUAACAGUUAGCCAAGUGGCCAGACU-UUUCCCUCCACGAGAUGACCCCAUCCU ...(((.((((((....)))))).)))..(((((.(((((((.........)))).))).)))))......-.............((((....)))).. ( -31.40) >DroEre_CAF1 30783 95 + 1 ----GUGACCCCAUUUGUGGGGUGACCCUGCCAUGUGGAGACACCUUUACUGUUAGCCAAAUGGCCAGACUUUCUCCCCCCAUGAGAUGACCCCAUCCU ----((.((((((....)))))).)).(((((((.(((.((((.......))))..))).)))).))).................((((....)))).. ( -28.00) >DroYak_CAF1 29356 96 + 1 ---GGUGACCCCAUUUAUGGGGUGACCCUGCCAUGUGGAGACACCUUUACAGUUAGCCAAAUGGCCAGACUUUCUCCCACCAUGAGAUGACCCCAUCCU ---(((.((((((....)))))).)))....((((.(((((.........((((.(((....)))..)))).)))))...)))).((((....)))).. ( -31.00) >consensus ___GGUGACCCCAUUUGUGGGGUGACCCUGCCAUGUGGAGACACCUUAACAGUUAGCCAAAUGGCCAGACUUUCUCCCUCCACGAGAUGACCCCAUCCU ...(((.((((((....)))))).)))..(((((.(((((((.........)))).))).)))))....................((((....)))).. (-27.77 = -28.27 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:51 2006