Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,411,970 – 11,412,063 |
Length | 93 |
Max. P | 0.717062 |
Location | 11,411,970 – 11,412,063 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 76.86 |
Mean single sequence MFE | -18.82 |
Consensus MFE | -1.36 |
Energy contribution | -2.04 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.12 |
Mean z-score | -1.56 |
Structure conservation index | 0.07 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717062 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11411970 93 - 20766785 UCAAAUUCAACUAUAACAGCACAUUGUUUACAACGCCCCCGAA----C-CCCUUUCGCU-GGGACCCUCGAACG-----GCAUCCCAAACAAAACCCGGGG--CAC ..............(((((....)))))......(((((((((----.-....)))).(-((((.((......)-----)..)))))..........))))--).. ( -20.70) >DroPse_CAF1 28578 105 - 1 UCAAAUUCAACUAUAACAGCACAUUGUUUGCCACGCCCCCGCUUGCGCCCCACACCGCUCCAGACCCUUGAGUGGGGAAGCCCCUUCAUCAGCAUCCAC-AUCCAC ........................(((..((((.((....)).)).))...)))((((((.((...)).))))))(((.((..........)).)))..-...... ( -17.10) >DroSec_CAF1 24973 93 - 1 UCAAAUUCAACUAUAACAGCACAUUGUUUACAACGCCCCCGAA----C-CCCUUUCGCU-GGGACACUCGAAUG-----GCAUCCCAAACAAAACCCGGGG--CAC ..............(((((....)))))......(((((((((----.-....)))).(-((((..((.....)-----)..)))))..........))))--).. ( -19.30) >DroSim_CAF1 24709 93 - 1 UCAAAUUCAACUAUAACAGCACAUUGUUUACAACGCCCCCGAA----C-CCCUUUCGCU-GGGACACUCGAAUG-----GCAUCCCAAACAAAACCCGGGG--CAC ..............(((((....)))))......(((((((((----.-....)))).(-((((..((.....)-----)..)))))..........))))--).. ( -19.30) >DroPer_CAF1 29477 105 - 1 UCAAAUUCAACUAUAACAGCACAUUGUUUGCCACGCCCCCGCUUGCGCCCCACACCGCUCCAGACCCUCGAGUGGGGAAGCCCCUUCAUCAGCAUCCAC-AUCCAC ........................((..(((......((((((((((........)))....(.....))))))))((((...))))....)))..)).-...... ( -17.70) >consensus UCAAAUUCAACUAUAACAGCACAUUGUUUACAACGCCCCCGAA____C_CCCUUUCGCU_GGGACCCUCGAAUG_____GCAUCCCAAACAAAACCCGGGG__CAC ....((((......(((((....))))).......(((.((((..........))))...)))......))))................................. ( -1.36 = -2.04 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:48 2006