Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,408,777 – 11,408,888 |
Length | 111 |
Max. P | 0.554362 |
Location | 11,408,777 – 11,408,888 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 86.10 |
Mean single sequence MFE | -33.44 |
Consensus MFE | -21.63 |
Energy contribution | -23.10 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.10 |
Mean z-score | -1.98 |
Structure conservation index | 0.65 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11408777 111 - 20766785 CCAGUCGGAGAUUUCUGAGCGGCAGAUGACAUUCUAUCUAGUAUG--UGUCUCGGGUUUAUUUGUCCUCUGCU--GCUGGCCAGCUCUAUUUGAAUAGUUCUCUGGCAAACUCCA ......((((.......(((((((((.((((....((((((....--...)).)))).....)))).))))))--))).(((((..((((....))))....)))))...)))). ( -38.50) >DroSec_CAF1 21862 108 - 1 CCAGUCGGAGAUUUCUGAGCGGCAGAUGACAUUCUAUCU---AUG--UGUCUCGGGUUUAUUUGUCCUCUGCU--GCUGGCCAGCUCUAUUUGAAUAGUUCUCUGGCAAACUCCA ......((((.......(((((((((.((((....((((---...--......)))).....)))).))))))--))).(((((..((((....))))....)))))...)))). ( -37.50) >DroSim_CAF1 21481 108 - 1 CCAGUCGGAGAUUUCUGAGCGGCAGAUGACAUUCUAUCU---AUG--UGUCUCGGGUUUAUUUGUCCUCUGCU--GCUGGCCAGCUCUAUUUGUAUAGUUCUCCGGCAAACUCCA ...((((((((...((((((((((((.((((....((((---...--......)))).....)))).))))))--)))...)))..((((....)))).))))))))........ ( -36.20) >DroEre_CAF1 24429 110 - 1 CCAGCCGGAGAUUUCUGAGCGGCAGAUGACAUUCUAUCU---AUG--UGUCUCGGGUUUAUUUGUACUGUGCUGUGCUGCCCAGCUCUAUUUGAAUAGUUCGCUGGCAUGCCCUG ...(((((.((.(((.((((....((.(((((.......---..)--))))))((((......((((......)))).)))).)))).....)))....)).)))))........ ( -31.70) >DroYak_CAF1 22937 97 - 1 CCAGUCGAAGAUUUCUGAGCGCCAGAUGACAUUCUAUCU---AUGUGUGUCUCGGGUGUAUUUGUGCUGGGC---------------UAUUUGAAUAGUUCUCUGACAAACUCCG (((((((((....(((((((((((((((......)))).---.)).))).))))))....)))).)))))((---------------(((....)))))................ ( -23.30) >consensus CCAGUCGGAGAUUUCUGAGCGGCAGAUGACAUUCUAUCU___AUG__UGUCUCGGGUUUAUUUGUCCUCUGCU__GCUGGCCAGCUCUAUUUGAAUAGUUCUCUGGCAAACUCCA ...((((((((...(((..(((((((.((((....((((...((....))...)))).....)))).))))))..(((....))).......)..))).))))))))........ (-21.63 = -23.10 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:45 2006