Locus 3365

Sequence ID 2R_DroMel_CAF1
Location 11,400,439 – 11,400,540
Length 101
Max. P 0.651013
window5499

overview

Window 9

Location 11,400,439 – 11,400,540
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 87.11
Mean single sequence MFE -19.38
Consensus MFE -17.03
Energy contribution -17.37
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.88
SVM decision value 0.25
SVM RNA-class probability 0.651013
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11400439 101 - 20766785
UCCAACACUGUAAUCAAACAGACGCCUAAACAACAAUCGACUAAAGGCAAUUCCUGAAAACUUUGUGACAAGUUCAGCGAGUCUUUUGCGAUUGUAAGUAA
.......((((......))))...........(((((((...((((((...((((((..((((......)))))))).))))))))..)))))))...... ( -22.30)
>DroVir_CAF1 21530 100 - 1
CACUUCACUCU-AUAAAUCAGACGCCUAAACAACAAUCGACUUAAGGCAAUACCUGAAAACUUUGUGACAAGUUCAGCGAGUCUUUUGCGAUUGUAAGUAA
...........-....................(((((((.(..(((((.....((((..((((......))))))))...)))))..))))))))...... ( -17.30)
>DroGri_CAF1 19894 100 - 1
CACUUCACUCU-AUAAAACAGACGCCUAAACAACAAUCGACUUAAGGCAAUACCUGAAAACUUUGUGACAAGUUCAGCGAGUCUUUUGCGAUUGUAAGUAA
...........-....................(((((((.(..(((((.....((((..((((......))))))))...)))))..))))))))...... ( -17.30)
>DroSec_CAF1 13433 101 - 1
UCCAACACUGUAAUCAAACAGACGCCUAAACAACAAUCGACUAAAGGCAAUUCCUGAAAACUUUGUGACAAGUUCAGCGAGUCUUUUGCGAUUGUAAGUAA
.......((((......))))...........(((((((...((((((...((((((..((((......)))))))).))))))))..)))))))...... ( -22.30)
>DroWil_CAF1 19328 90 - 1
-----------AAUCUCAAAGACGUCUAAACAACAAUCGAUUAAAGGCAAUACCUGAAAACUUUGUGACAAGUUCAGCGAGUCUUUUGCGAUUGUAAGUAA
-----------.....................(((((((...((((((.....((((..((((......))))))))...))))))..)))))))...... ( -17.70)
>DroAna_CAF1 13340 89 - 1
UCCA------------CUCAGACGCCUAAACAACAAUCGACUAAAGGCAAUUCCUGAAAACUUAGUGACAAGUUCAGCGAGUCUUUUGCGAUUGUAAGUAA
....------------................(((((((...((((((...((((((..((((......)))))))).))))))))..)))))))...... ( -19.40)
>consensus
UCCA_CACU_U_AUCAAACAGACGCCUAAACAACAAUCGACUAAAGGCAAUACCUGAAAACUUUGUGACAAGUUCAGCGAGUCUUUUGCGAUUGUAAGUAA
................................(((((((...((((((.....((((..((((......))))))))...))))))..)))))))...... (-17.03 = -17.37 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:44 2006