Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,396,136 – 11,396,234 |
Length | 98 |
Max. P | 0.775065 |
Location | 11,396,136 – 11,396,234 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 90.07 |
Mean single sequence MFE | -31.78 |
Consensus MFE | -28.04 |
Energy contribution | -28.35 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.16 |
Mean z-score | -1.60 |
Structure conservation index | 0.88 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11396136 98 + 20766785 --UGGUGGGCGUUGAGCAGGCGGCGUUCAGCGGACGUGAAGAGGUCGAGGAGUAAGGAAGUGGAGGAAUGGAGGAGUAGGUCUCCAUGUACUUACACCGU --.(.(((((((((......))))))))).).(((.(....).)))..((.(((((...(((((((..((......))..)))))))...))))).)).. ( -33.60) >DroSec_CAF1 9105 98 + 1 --UGGUGGGCGUUGAGCAGGCGGCGUUCAGCGGACGUGGAGAGGUCGAGGAGUAAGGCAGUGGAGGAAUGGAGGAGUGGGUCUCCAUGUACUUACACCGU --.(.(((((((((......))))))))).).(((.(....).)))..((.(((((...(((((((.((......))...)))))))...))))).)).. ( -32.90) >DroSim_CAF1 8702 98 + 1 --UGGUGGGCGUUGAGCAGGCGGCGUUCAGCGGACGUGGAGAGGUCGAGGAGUAAGGCAGUGGAGGAAUGGAGGAGUGGGUCUCCAUGUACUUACACCGU --.(.(((((((((......))))))))).).(((.(....).)))..((.(((((...(((((((.((......))...)))))))...))))).)).. ( -32.90) >DroYak_CAF1 9918 100 + 1 GUUGGUGGGCGUUAAGGAGGCGGCGUUCAGCGGGCGUCGAGAGGUCGAGGAUUGGAGGAGUGAAGGAGUGAGGGAAUGGGACUCCAUGUACUUACACCGU ...(((((((.((..(..(.(.((.....)).).)..)..)).)))...........(((((..(((((...........)))))...))))).)))).. ( -27.70) >consensus __UGGUGGGCGUUGAGCAGGCGGCGUUCAGCGGACGUGGAGAGGUCGAGGAGUAAGGCAGUGGAGGAAUGGAGGAGUGGGUCUCCAUGUACUUACACCGU ..((.(((((((((......))))))))).))(((.(....).)))..((.(((((...(((((((.((......))...)))))))...))))).)).. (-28.04 = -28.35 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:42 2006