Locus 336

Sequence ID 2R_DroMel_CAF1
Location 2,188,542 – 2,188,641
Length 99
Max. P 0.758285
window678

overview

Window 8

Location 2,188,542 – 2,188,641
Length 99
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 81.03
Mean single sequence MFE -31.16
Consensus MFE -21.20
Energy contribution -23.53
Covariance contribution 2.33
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.68
SVM decision value 0.49
SVM RNA-class probability 0.758285
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2188542 99 + 20766785
CCGGGGAUCUUAAUCCCAUUGAGGUCUCCUUGAUGAAAACCAUAUCC------------------UUGGCAUUGUGUUCGUUUGUGGGUGGAAUAUCAUUUUCUAAACAGAUGCACA
((((((((........(((..(((...)))..)))........))))------------------))))...(((((..((((((...(((((.......))))).))))))))))) ( -28.69)
>DroSec_CAF1 12738 114 + 1
CCGGGGAUCUCAAUCCCAAUGACGUAUUCUUG---AGAACCAUAUCCGACUAUGGUAUACGAUUUAUGGUAUUGUGUGCGUUUGUGGGUGGAAUAUAAUUCUCUAAACAGAUGCACA
((((((((....))))).....(((((((...---.))((((((......))))))))))).....))).....(((((((((((..(.(((((...))))).)..))))))))))) ( -32.30)
>DroSim_CAF1 12329 114 + 1
CCGGGGAUCUUAAUCCCAAUGACGUAUUCUUG---AGAACCAUAUCCGACUAUGGUAUACGAUGAAUGGUAUUGUGUGCGUUUGUGGGUGGAAUAUCAUUCUCUAAACAGAUGCACA
...(((((....)))))....((.((((((((---...((((((......))))))...))).)))))))....(((((((((((..(.(((((...))))).)..))))))))))) ( -32.50)
>consensus
CCGGGGAUCUUAAUCCCAAUGACGUAUUCUUG___AGAACCAUAUCCGACUAUGGUAUACGAU__AUGGUAUUGUGUGCGUUUGUGGGUGGAAUAUCAUUCUCUAAACAGAUGCACA
((((((((....))))).....................((((((......))))))..........))).....(((((((((((...((((.........)))).))))))))))) (-21.20 = -23.53 +   2.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:51 2006