Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,188,542 – 2,188,641 |
Length | 99 |
Max. P | 0.758285 |
Location | 2,188,542 – 2,188,641 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.03 |
Mean single sequence MFE | -31.16 |
Consensus MFE | -21.20 |
Energy contribution | -23.53 |
Covariance contribution | 2.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.68 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2188542 99 + 20766785 CCGGGGAUCUUAAUCCCAUUGAGGUCUCCUUGAUGAAAACCAUAUCC------------------UUGGCAUUGUGUUCGUUUGUGGGUGGAAUAUCAUUUUCUAAACAGAUGCACA ((((((((........(((..(((...)))..)))........))))------------------))))...(((((..((((((...(((((.......))))).))))))))))) ( -28.69) >DroSec_CAF1 12738 114 + 1 CCGGGGAUCUCAAUCCCAAUGACGUAUUCUUG---AGAACCAUAUCCGACUAUGGUAUACGAUUUAUGGUAUUGUGUGCGUUUGUGGGUGGAAUAUAAUUCUCUAAACAGAUGCACA ((((((((....))))).....(((((((...---.))((((((......))))))))))).....))).....(((((((((((..(.(((((...))))).)..))))))))))) ( -32.30) >DroSim_CAF1 12329 114 + 1 CCGGGGAUCUUAAUCCCAAUGACGUAUUCUUG---AGAACCAUAUCCGACUAUGGUAUACGAUGAAUGGUAUUGUGUGCGUUUGUGGGUGGAAUAUCAUUCUCUAAACAGAUGCACA ...(((((....)))))....((.((((((((---...((((((......))))))...))).)))))))....(((((((((((..(.(((((...))))).)..))))))))))) ( -32.50) >consensus CCGGGGAUCUUAAUCCCAAUGACGUAUUCUUG___AGAACCAUAUCCGACUAUGGUAUACGAU__AUGGUAUUGUGUGCGUUUGUGGGUGGAAUAUCAUUCUCUAAACAGAUGCACA ((((((((....))))).....................((((((......))))))..........))).....(((((((((((...((((.........)))).))))))))))) (-21.20 = -23.53 + 2.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:51 2006