Locus 3358

Sequence ID 2R_DroMel_CAF1
Location 11,388,259 – 11,388,351
Length 92
Max. P 0.548651
window5489

overview

Window 9

Location 11,388,259 – 11,388,351
Length 92
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 75.92
Mean single sequence MFE -26.23
Consensus MFE -16.41
Energy contribution -16.05
Covariance contribution -0.36
Combinations/Pair 1.25
Mean z-score -1.26
Structure conservation index 0.63
SVM decision value 0.03
SVM RNA-class probability 0.548651
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11388259 92 - 20766785
C-----AAUCUGCC----C-GUUUUGCCUAC-AGGUGCGCAUGGUGUGCAGCAACAACCGCAAGUACAUCAAGAACUUGGACAUCGUGCGCAAGUGCGGAUGC
.-----.((((((.----(-.....(((...-.)))(((((((((((.(.((.......))((((.(.....).))))).)))))))))))..).)))))).. ( -32.50)
>DroPse_CAF1 4917 92 - 1
C-----CCCCUUUU----U-GUUUCGUCGAU-AGGUGCGCAUGGUGUGCAGCAACAACCGCAAGUACAUCAAGAACUUGGAUAUUGUCCGGAAGUGCGGAUGC
.-----(((((..(----(-(......))).-))).((((.((((((((.((.......))..)))))))).....((((((...))))))..)))))).... ( -23.10)
>DroGri_CAF1 4966 89 - 1
-------CUAUUUC----U-CUUUAUUC-AC-AGGUGCGCAUGGUGUGCAGCAAUAAUCGCAAAUAUAUCAAGAAUUUAGAUAUUGUGCGCAAAUGUGGAUGC
-------.......----.-...(((((-((-(..((((((..((((...((.......))((((.........))))..))))..))))))..)))))))). ( -25.30)
>DroWil_CAF1 5143 94 - 1
C-----UCUCUAAUCUCUC-GAUU--CUCAC-AGGUGCGCAUGGUGUGCAGCAAUAAUCGCAAGUACAUCAAGAACUUGGAUAUUGUGCGCAAAUGUGGAUGC
.-----.............-...(--(.(((-(..((((((..((((.(.((.......))((((.(.....).))))).))))..))))))..))))))... ( -27.50)
>DroMoj_CAF1 5359 84 - 1
-------------U----U-UUCUCUUCAAC-AGGUGCGCAUGGUAUGCAGCAACAACCGCAAAUAUAUCAAGAACUUGGAUAUUGUGCGCAAGUGCGGGUGC
-------------.----.-......((..(-(..((((((..((((...((.......)).......((((....))))))))..))))))..))..))... ( -21.10)
>DroAna_CAF1 4487 99 - 1
AAAGAGUAACUCCC----AUAUCUUACGAACUAGGUGCGCAUGGUGUGCAGCAACAACCGCAAGUACAUCAAGAACUUGGACAUCGUGCGCAAGUGCGGAUGC
..........((((----((((((........))))(((((((((((.(.((.......))((((.(.....).))))).)))))))))))..))).)))... ( -27.90)
>consensus
C______CUCUUCC____U_GUUUCGCCAAC_AGGUGCGCAUGGUGUGCAGCAACAACCGCAAGUACAUCAAGAACUUGGAUAUUGUGCGCAAGUGCGGAUGC
...................................((((((((((((.(.((.......))((((.(.....).))))).))))))))))))........... (-16.41 = -16.05 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:35 2006