| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,386,158 – 11,386,273 |
| Length | 115 |
| Max. P | 0.743139 |
| Location | 11,386,158 – 11,386,273 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 94.99 |
| Mean single sequence MFE | -41.62 |
| Consensus MFE | -37.12 |
| Energy contribution | -37.88 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601129 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11386158 115 + 20766785 UGCAUCCCGAAGGCAGCUAGCCAGCCUCCAUAGACUGCAUGAUGAUCAUGACGAUGCAGGAAACGGGGAUUGGGUGGGGGGAUGUGGGGCAUUCGACACCGAAAAUCGAAUCCCC .(((((((...(((.....)))..((.((........((((.....)))).((((.(.(....)..).)))))).)).)))))))((((.((((((.........)))))))))) ( -42.70) >DroSec_CAF1 4985 111 + 1 CGCAUCCCGAAGGCAGCCA----GCCUCCAUAGAAUGCAUGAUGAUCAUGACGAUGCAGGAAACGGGGAUUGGGUGGGGGGAUGUGGGGCAUUCGACACCGAACAUCGAAUCCCC .(((((((..((((.....----))))((((......((((.....)))).((((.(.(....)..).)))).)))).)))))))((((.((((((.........)))))))))) ( -41.60) >DroSim_CAF1 4986 111 + 1 CGCAUCCCGAAGGCAGCUA----GCCUCCAUAGAAUGCAUGAUGAUCAUGACGAUGCAGGAAACGGGGAUUGGGUGGGGGGAUGUGGGGCAUUCGACACCGAACAUCGAAUCCCC .(((((((..((((.....----))))((((......((((.....)))).((((.(.(....)..).)))).)))).)))))))((((.((((((.........)))))))))) ( -41.60) >DroYak_CAF1 5082 111 + 1 CGCAUCCCGAAGGCAGCUA----GCCUCCAUAGACUGGAUGAUGAUCAUGACGAUGCAGGAAACGGGGUUGGGGUGGGGGGAUGUGGGGCAUUCGACACCGAACAUCGAAUCCCC .(((((((...(((.....----)))((((.....))))......((((..((((.(.(....).).))))..)))).)))))))((((.((((((.........)))))))))) ( -40.60) >consensus CGCAUCCCGAAGGCAGCUA____GCCUCCAUAGAAUGCAUGAUGAUCAUGACGAUGCAGGAAACGGGGAUUGGGUGGGGGGAUGUGGGGCAUUCGACACCGAACAUCGAAUCCCC .(((((((..((((.........))))((((......((((.....)))).((((.(.(....)..).)))).)))).)))))))((((.((((((.........)))))))))) (-37.12 = -37.88 + 0.75)
| Location | 11,386,158 – 11,386,273 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 94.99 |
| Mean single sequence MFE | -38.27 |
| Consensus MFE | -34.70 |
| Energy contribution | -35.45 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.743139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11386158 115 - 20766785 GGGGAUUCGAUUUUCGGUGUCGAAUGCCCCACAUCCCCCCACCCAAUCCCCGUUUCCUGCAUCGUCAUGAUCAUCAUGCAGUCUAUGGAGGCUGGCUAGCUGCCUUCGGGAUGCA (((((((((((.......))))))).)))).((((((..........((((((...((((((.((.......)).))))))...)))).))..(((.....)))...)))))).. ( -41.70) >DroSec_CAF1 4985 111 - 1 GGGGAUUCGAUGUUCGGUGUCGAAUGCCCCACAUCCCCCCACCCAAUCCCCGUUUCCUGCAUCGUCAUGAUCAUCAUGCAUUCUAUGGAGGC----UGGCUGCCUUCGGGAUGCG (((((((((((.......))))))).)))).((((((..........................(.((((.....))))).......((((((----.....)))))))))))).. ( -38.30) >DroSim_CAF1 4986 111 - 1 GGGGAUUCGAUGUUCGGUGUCGAAUGCCCCACAUCCCCCCACCCAAUCCCCGUUUCCUGCAUCGUCAUGAUCAUCAUGCAUUCUAUGGAGGC----UAGCUGCCUUCGGGAUGCG (((((((((((.......))))))).)))).((((((..........................(.((((.....))))).......((((((----.....)))))))))))).. ( -38.30) >DroYak_CAF1 5082 111 - 1 GGGGAUUCGAUGUUCGGUGUCGAAUGCCCCACAUCCCCCCACCCCAACCCCGUUUCCUGCAUCGUCAUGAUCAUCAUCCAGUCUAUGGAGGC----UAGCUGCCUUCGGGAUGCG (((((((((((.......))))))).)))).((((((....................((.(((.....))))).............((((((----.....)))))))))))).. ( -34.80) >consensus GGGGAUUCGAUGUUCGGUGUCGAAUGCCCCACAUCCCCCCACCCAAUCCCCGUUUCCUGCAUCGUCAUGAUCAUCAUGCAGUCUAUGGAGGC____UAGCUGCCUUCGGGAUGCG (((((((((((.......))))))).)))).((((((............((((...((((((.((.......)).))))))...))))((((.........))))..)))))).. (-34.70 = -35.45 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:34 2006