Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,380,832 – 11,380,987 |
Length | 155 |
Max. P | 0.990442 |
Location | 11,380,832 – 11,380,947 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.51 |
Mean single sequence MFE | -43.29 |
Consensus MFE | -36.73 |
Energy contribution | -35.66 |
Covariance contribution | -1.06 |
Combinations/Pair | 1.20 |
Mean z-score | -2.87 |
Structure conservation index | 0.85 |
SVM decision value | 2.21 |
SVM RNA-class probability | 0.990442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11380832 115 + 20766785 GUCUAAUGCGAU-----UUACUUACCAAAUUGUAUAUUCGCGUGCCUGAUUUCUUUGGAGACAUCUCACCGGCAGCCACAGCCCCCGCAGAAGCGGCAGGAUCUCCGCUGCUUCCAGGCA .....((((((.-----.(((..........)))...))))))(((((.........(((....)))..(((..((....))..)))..((((((((.((....))))))))))))))). ( -39.20) >DroSec_CAF1 8093 115 + 1 UUCCAAUGCGAU-----UUACUUACCAAAUUGCAUAUUCGUGAGCCGGAUUUCUUUGGAGACAUCUCGCCGGCAGCCACAGCAGCCGCAGAAGCGGCAGGAUCUCCGCUGCUUCCCGGCA .....(((((((-----((.......)))))))))....(((.(((((.......((....)).....)))))...)))....((((..((((((((.((....)))))))))).)))). ( -45.30) >DroSim_CAF1 9516 115 + 1 UUCUAAUGCGAU-----UUACUUACCAAAUUGCAUAUUCGUGUGCCGGAUUUCUUUGGAGACAUCUCGCCGGCAGCCACAGCAGCCGCAGAAGCGGCAGGAUCUCCGCUGCUUCCCGGCA .....(((((((-----((.......)))))))))....(((((((((.......((....)).....))))))..)))....((((..((((((((.((....)))))))))).)))). ( -46.80) >DroEre_CAF1 8239 120 + 1 UCCUUAUGCGAUUAAAUUUGCUUACCAAGUUGCAUAUUCGUGUGCCAGAUUUCUUCGGCGACGUCUCCCCGGCAGCCACAGCAGCCGCAGAGGAGGCAGGAUCGCCGCUGCUUCCUGGCA ....(((((((((..............)))))))))......((((((....(..((((((.(((((((((((.((....)).))))..).))))))....))))))..)....)))))) ( -41.84) >consensus UUCUAAUGCGAU_____UUACUUACCAAAUUGCAUAUUCGUGUGCCGGAUUUCUUUGGAGACAUCUCGCCGGCAGCCACAGCAGCCGCAGAAGCGGCAGGAUCUCCGCUGCUUCCCGGCA .....(((((((................)))))))........(((((.......((....))......((((.((....)).))))..((((((((.((....))))))))))))))). (-36.73 = -35.66 + -1.06)
Location | 11,380,867 – 11,380,987 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.53 |
Mean single sequence MFE | -53.55 |
Consensus MFE | -46.49 |
Energy contribution | -48.17 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.10 |
Mean z-score | -2.00 |
Structure conservation index | 0.87 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11380867 120 + 20766785 CGUGCCUGAUUUCUUUGGAGACAUCUCACCGGCAGCCACAGCCCCCGCAGAAGCGGCAGGAUCUCCGCUGCUUCCAGGCAGUUGGGUAGAGGGUACAGCUUCCAAGGGUACAUCAGGCGG ..((((((((.(((((((((((.((((.(((((.(((...((....)).((((((((.((....))))))))))..))).)))))...)))))).....)))))))))...)))))))). ( -52.60) >DroSec_CAF1 8128 120 + 1 UGAGCCGGAUUUCUUUGGAGACAUCUCGCCGGCAGCCACAGCAGCCGCAGAAGCGGCAGGAUCUCCGCUGCUUCCCGGCAGUUGGGUAGAGGGUACAGUUUCCAGGGGUAUAUCAGGCGG ...(((.(((.(((((((((((.....(((..(.(((.((((.((((..((((((((.((....)))))))))).)))).))))))).)..)))...)))))))))))...))).))).. ( -56.90) >DroSim_CAF1 9551 120 + 1 UGUGCCGGAUUUCUUUGGAGACAUCUCGCCGGCAGCCACAGCAGCCGCAGAAGCGGCAGGAUCUCCGCUGCUUCCCGGCAGUUGGGUAGAGGGUACAGUUUCCAGGGGUAUAUCAGGCGG ..((((.(((.(((((((((((.....(((..(.(((.((((.((((..((((((((.((....)))))))))).)))).))))))).)..)))...)))))))))))...))).)))). ( -56.90) >DroEre_CAF1 8279 120 + 1 UGUGCCAGAUUUCUUCGGCGACGUCUCCCCGGCAGCCACAGCAGCCGCAGAGGAGGCAGGAUCGCCGCUGCUUCCUGGCAGUUGGGUAGAGGGUACAGCUUCCAUGGGCACAUCAGGCGG ((((((.((.....))(((..(.(((.((((((.(((...((....))..(((((((((........)))))))))))).)))))).))).).....)))......))))))........ ( -47.80) >consensus UGUGCCGGAUUUCUUUGGAGACAUCUCGCCGGCAGCCACAGCAGCCGCAGAAGCGGCAGGAUCUCCGCUGCUUCCCGGCAGUUGGGUAGAGGGUACAGCUUCCAGGGGUACAUCAGGCGG ...(((.(((.(((((((((((.....(((..(.(((.((((.((((..((((((((.((....)))))))))).)))).))))))).)..)))...)))))))))))...))).))).. (-46.49 = -48.17 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:32 2006