Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,380,316 – 11,380,436 |
Length | 120 |
Max. P | 0.988405 |
Location | 11,380,316 – 11,380,436 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.00 |
Mean single sequence MFE | -42.72 |
Consensus MFE | -35.22 |
Energy contribution | -36.82 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.27 |
Structure conservation index | 0.82 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11380316 120 - 20766785 CCCCAUCGGCCAGUCCCUCCGUAAGCAUCUUGAAGCGCAAGCUACGAUGCGAAAGUCUCGAUGAUGUUACUCUGGACUCGCCGGCUCUAAAGCGUAAGCGAGUUAGUUUCCACGACCCAC .....(((((.(((((....((((.((((....(((....))).(((.((....)).)))..))))))))...))))).)))((..((((.((....))...))))...))..))..... ( -41.20) >DroSec_CAF1 7574 120 - 1 CCCCAUCGGCCAGUCCCUCGGUAAGCAUCCUGAAGCGCAAGCUGCGAUGCGAAAGUAUCGAUGAUGUUACUCUGGAGUCGCCGGCUCUAAAGCGUAAGCGUGUUAGCUUCCACGACCCAC .......(((.(.(((...(((((.((((....(((....))).((((((....))))))..)))))))))..))).).)))((.((....((....))(((........))))).)).. ( -42.40) >DroSim_CAF1 9007 120 - 1 CCCCAUCGGCCAGUCCCUCGGUAAGCAUCCUGAAGCGCAAGCUACGAUGCGAAAGUCUCGAUGAUGUUACUCUGGACUCGCCGGCUCUAAAGCGUAAGCGUGUUAGCUUCCACGACCCAC .......(((.(((((...(((((.((((....(((....))).(((.((....)).)))..)))))))))..))))).)))((.((....((....))(((........))))).)).. ( -42.80) >DroEre_CAF1 7731 120 - 1 CCCCUUCGGCCAGUCCCUCGGUCAGCAUCCUAAAGCGCAAGCUGCGAUGCGAAAGUCUCGAUGAUGUUACUCUGGACUCGCCGGCCCUAAAGCGAAAGCGAGUUAGCUUCCACGACCCAC .......(((.(((((...(((.((((((....(((....))).(((.((....)).)))..)))))))))..))))).)))((..((((.((....))...))))...))......... ( -42.50) >DroYak_CAF1 7874 120 - 1 CGCCAUCAGCCAGUCCCUCGGUAAGCAUCAUGAAGCGCAAGCUGAGAUGCGAAAGUUUAGAUGAUGUUACUCUAGACUGGCCGGCCCUUAAGCGAAAGCGGGUUAUCUUCCACGACCCAC .(((....(((((((....(((((.((((((..(((....))).....((....))....)))))))))))...))))))).)))......((....))(((((.........))))).. ( -44.70) >consensus CCCCAUCGGCCAGUCCCUCGGUAAGCAUCCUGAAGCGCAAGCUGCGAUGCGAAAGUCUCGAUGAUGUUACUCUGGACUCGCCGGCUCUAAAGCGUAAGCGAGUUAGCUUCCACGACCCAC .....(((((.(((((...(((.((((((....(((....))).(((.((....)).)))..)))))))))..))))).)))((..((((.((....))...))))...))..))..... (-35.22 = -36.82 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:30 2006