Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,378,460 – 11,378,567 |
Length | 107 |
Max. P | 0.723676 |
Location | 11,378,460 – 11,378,567 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.34 |
Mean single sequence MFE | -39.84 |
Consensus MFE | -31.84 |
Energy contribution | -31.72 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.57 |
Structure conservation index | 0.80 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11378460 107 + 20766785 UAUCUGCCGAUG----------UCGGCGACGACGCGUUGUUUGCUAGCACGUGAACAUUAUCAAUGGAUGCG---GCGGACAUGGCGGGGUAAUUUGACUUUGCCGCGACCAGAACAACA ..((((((...(----------(((....))))((..((((..(......)..))))..(((....))))))---)))))..(((((.(((((.......))))).)).)))........ ( -37.50) >DroSec_CAF1 5641 117 + 1 UAUCUGCCGAUGCGUAUCUCUAUCUGCGACGACGCGUUGUUUGCUAGCACGUGAACAUUAUCAAUGGACGCG---GCGGACGUGGCGGGGUAAUUUGACUUUGCCGCGACCAGAACAACA ...........((((.((.(.....).))..))))(((((((....((.((((..(((.....)))..))))---))((.(((((((((((......))))))))))).)).))))))). ( -41.80) >DroSim_CAF1 7077 107 + 1 UAUCUGCCGAUG----------UCGGCGACGACGCGUUGUUUGCUAGCACGUGAACAUUAUCAAUGGACGCG---GCGGACGUGGCGGGGUAAUUUGACUUUGCCGCGACCAGAACAACA ....(((((...----------.))))).......(((((((....((.((((..(((.....)))..))))---))((.(((((((((((......))))))))))).)).))))))). ( -43.80) >DroEre_CAF1 5771 105 + 1 UAUCUGCCGAUG----------UCGGCGACGACGCGUUGUUUGCUAGCACGUGAACAUUAUCAAUGGACGCG---GCGGC--GGGCGGGGUAGUUUGACUUUGCCGCGACCAGAACAGCA ....(((((...----------.))))).......(((((((....((.((((..(((.....)))..))))---))(((--(((((((((......)))))))).)).)).))))))). ( -39.80) >DroYak_CAF1 5883 108 + 1 UAUCUGCCGAUG----------UCGGCGACGACGCGUUGUUUGCUAGCACGUGAACAUUAUCAAUGGACGCGUAGACGGA--AGGCGGGGUAAUUUGACUUUGCCGCGACCAGAACAACA ....(((((...----------.))))).......(((((((....(((((((..(((.....)))..))))).......--.((((((((......)))))))))).....))))))). ( -36.30) >consensus UAUCUGCCGAUG__________UCGGCGACGACGCGUUGUUUGCUAGCACGUGAACAUUAUCAAUGGACGCG___GCGGAC_UGGCGGGGUAAUUUGACUUUGCCGCGACCAGAACAACA ....((((((............)))))).......(((((((....((.((((..(((.....)))..))))...........((((((((......)))))))))).....))))))). (-31.84 = -31.72 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:24 2006