| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,378,255 – 11,378,362 |
| Length | 107 |
| Max. P | 0.779728 |
| Location | 11,378,255 – 11,378,362 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 82.69 |
| Mean single sequence MFE | -38.26 |
| Consensus MFE | -27.19 |
| Energy contribution | -28.51 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11378255 107 - 20766785 GCUGGCAUUUGUGCAAAUACUACAAUAUAAUAUUAUGUUCCAACGUGGGCGGAGCGCUCUACACGCCACGGAUGCGUGUUAGGUGCUCCGUCGGUGCUCCAAC---AAAG .......(((((.....((((............(((((....)))))(((((((((((..((((((.......))))))..))))))))))))))).....))---))). ( -37.30) >DroSec_CAF1 5464 102 - 1 GCUGACAUUUGUGCAAAUACUA-----UAAUAUUAUAUUCCAGCGUGGGCGGAGCGCUCUGCACGCCGCGGAUGCGUGUUAGGUGCUCCGUCGGUGCUCCCAC---AAAG .......((((((.......((-----((....))))....(((((.(((((((((((..((((((.......))))))..))))))))))).)))))..)))---))). ( -39.60) >DroSim_CAF1 6873 102 - 1 GCUGGCAUUUGUGCAAAUACUA-----UAAUAUUAUAUUCCAGCGUGGGCGGAGCGCUCUGCACGCCGCGGAUGCGUGUUAGGUGCUCCGUCGGUGCUCCCAC---AAAG (((((((....)))......((-----((....))))...))))((((((((((((((..((((((.......))))))..)))))))))))((....)))))---.... ( -42.00) >DroEre_CAF1 5548 94 - 1 GCUGGCAUGCGGGCAAAUACAA-----UAAUAUUGUAUUCCAGCGUGGGCGGAGCGUUCUGCACGCCGCGGAUGCGUGCUAGGUG-----------CUGCGGCGGACAAG .....(((((.((..(((((((-----(...)))))))))).))))).((((......)))).((((((((.(((.......)))-----------))))))))...... ( -34.90) >DroYak_CAF1 5687 101 - 1 GCUGGCAUUUGUGCAAAUACAA-----UACUAUUAUAUUCCAGCGUGGGCGGAGCGCUCUGCACGCCGAUGGUGCGUGUUAGGUGCUCU----GUGCUCCGGCGGACAAG (((((...(((((....)))))-----...................(.((((((((((..(((((((....).))))))..))))))))----)).).)))))....... ( -37.50) >consensus GCUGGCAUUUGUGCAAAUACUA_____UAAUAUUAUAUUCCAGCGUGGGCGGAGCGCUCUGCACGCCGCGGAUGCGUGUUAGGUGCUCCGUCGGUGCUCCCAC___AAAG (((((.((.((......................)).)).)))))...(((((((((((..((((((.......))))))..))))))))))).................. (-27.19 = -28.51 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:23 2006