Locus 3351

Sequence ID 2R_DroMel_CAF1
Location 11,377,579 – 11,377,681
Length 102
Max. P 0.951700
window5477

overview

Window 7

Location 11,377,579 – 11,377,681
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 98.44
Mean single sequence MFE -32.00
Consensus MFE -30.12
Energy contribution -30.32
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.94
SVM decision value 1.41
SVM RNA-class probability 0.951700
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11377579 102 + 20766785
GUGU-UCGCAGCGAAUUUGUUCUGUAACUGGCGGCGGUCGGGCAGCGUAUCUGAUAUUUUUAUUGUUUCGCGCUCUUCGCUCGGCAGAUUCAGAUUAUUCAAU
....-.......((((....((((...(((.((((((..((((.(((.....((((....))))....))))))).)))).)).)))...))))..))))... ( -29.40)
>DroSec_CAF1 4776 102 + 1
GUGU-UCGGAGCGAAUUUGUUCUGUAACUGGCGGCGGACGGGCAGCGUAUCUGAUAUUUUUAUUGUUUCGCGCUCUUCGCUCGGCAGAUUCAGAUUAUUCAAU
....-.......((((....((((...(((.(((((((.((((.(((.....((((....))))....)))))))))))).)).)))...))))..))))... ( -31.50)
>DroSim_CAF1 6180 102 + 1
GUGU-UCGGAGCGAAUUUGUUCUGUAACUGGCGGCGGACGGGCAGCGUAUCUGAUAUUUUUAUUGUUUCGCGCUCUUCGCUCGGCAGAUUCAGAUUAUUCAAU
....-.......((((....((((...(((.(((((((.((((.(((.....((((....))))....)))))))))))).)).)))...))))..))))... ( -31.50)
>DroEre_CAF1 4865 102 + 1
GUGU-UCGGAGCGAAUUUGUUCUGUAACUGGCGGCGGACGGGCAGCGUAUCUGAUAUUUUUAUUGUUUCGCGCUCUUCGCUCGGCAGAUUCAGAUUAUUCAAU
....-.......((((....((((...(((.(((((((.((((.(((.....((((....))))....)))))))))))).)).)))...))))..))))... ( -31.50)
>DroYak_CAF1 4949 103 + 1
GUGUGUCGGAGCGAAUUUGUUCUGUAACUGGCGGCGGACGGGCAGCGUAUCUGAUAUUUUUAUUGUUUCGCGCUCUUCGCUCGCCAGAUUCAGAUUAUUCAAU
............((((....((((...(((((((((((.((((.(((.....((((....))))....)))))))))))).))))))...))))..))))... ( -36.10)
>consensus
GUGU_UCGGAGCGAAUUUGUUCUGUAACUGGCGGCGGACGGGCAGCGUAUCUGAUAUUUUUAUUGUUUCGCGCUCUUCGCUCGGCAGAUUCAGAUUAUUCAAU
............((((....((((...(((.(((((((.((((.(((.....((((....))))....)))))))))))).)).)))...))))..))))... (-30.12 = -30.32 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:22 2006