Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,372,119 – 11,372,231 |
Length | 112 |
Max. P | 0.931351 |
Location | 11,372,119 – 11,372,231 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.84 |
Mean single sequence MFE | -37.67 |
Consensus MFE | -23.82 |
Energy contribution | -24.55 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.56 |
Mean z-score | -1.68 |
Structure conservation index | 0.63 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11372119 112 + 20766785 --------UGUCCACUGCUAACGUUCUAUCAUUACAGAUGUUGGGCAAAUUGGCGGACUCACUAGCUUUGACGCCGAAGAAGGGUAAGCUCCCCUUUUUCUGGGACCCCAAACUAGACAU --------.((((....(((((((.((........)))))))))((......))))))...((((.((((...(((((((((((.......)))))))))..))....)))))))).... ( -31.70) >DroSec_CAF1 5112 112 + 1 --------UGUCCACUGCUGACGUUCUAUCAUUACAGAUGUUGGGCAAGUUGGCGGACUCCCUGGCUUUGACGCCGAGGAAGGGCAAGCUGCCCUUUUUCUGGGACCCCAAACUAGACAU --------((((....((..((..((((.((((...)))).))))...))..))((..((((.(((......)))((((((((((.....)))))))))).))))..))......)))). ( -43.30) >DroSim_CAF1 5790 112 + 1 --------UGUCCACUGCCGACGUUUUAUCAUUACAGAUGUUGGGCAAGUUGGCGGACUCCCUGGCUUUGACGCCGAAGAAGGGCAAGCUGCCCUUUUUCAGGGACCCUAAACUAGACAU --------((((..((((((((((((((((......))))..))))..))))))))..((((((((......)))((((((((((.....)))))))))))))))..........)))). ( -45.30) >DroEre_CAF1 5169 112 + 1 --------UGCCCACUGCUAACGUUCCGUCGCUACAGAUGUUGGGCAAGUUGGCGGACUUACUAGCUUUGACGCCGAGGAAGGGCAGGUUGCCCUACUUCUGGGACCCCAAGCUGGACAU --------......((((((((((((((((......))))..))))..)))))))).....(((((((.(...((.(((((((((.....)))))..)))).))...).))))))).... ( -40.50) >DroYak_CAF1 5961 107 + 1 --------U-----CUAAUAAUUUUGAAAUGUUAUAGAUGAUGAGCAAACUGGCGGACUCGUUAGCUUUGACGCCGAGGAAGGGCAGGUUGCCCUUUUUCUGGGACCCCAAACUGGACAU --------(-----(((.((((........))))))))......(((((((((((....)))))).)))).)(((((((((((((.....))))))))))(((....)))....)).).. ( -30.50) >DroAna_CAF1 5680 111 + 1 AGCUGACCUGGCCCUGACCAAC---------UUUCAGAUGCUCGACCGGCUGGGCAACACCCUCCGGUUGACCUCUUCCAAGGGCAAGCUGCUUUUCUUUUGGGACCCCAAGCUGGACAU ((((......(((((((.....---------..))(((.(.((((((((..(((.....))).))))))))).)))....))))).)))).....((((((((....)))))..)))... ( -34.70) >consensus ________UGUCCACUGCUAACGUUCUAUCAUUACAGAUGUUGGGCAAGUUGGCGGACUCCCUAGCUUUGACGCCGAGGAAGGGCAAGCUGCCCUUUUUCUGGGACCCCAAACUAGACAU ..............((((((((..((((.((((...)))).))))...)))))))).....((((.((((...((((((((((((.....))))))))))..))....)))))))).... (-23.82 = -24.55 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:21 2006