Locus 335

Sequence ID 2R_DroMel_CAF1
Location 2,184,236 – 2,184,356
Length 120
Max. P 0.512198
window677

overview

Window 7

Location 2,184,236 – 2,184,356
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.67
Mean single sequence MFE -29.74
Consensus MFE -20.18
Energy contribution -19.52
Covariance contribution -0.66
Combinations/Pair 1.31
Mean z-score -1.24
Structure conservation index 0.68
SVM decision value -0.04
SVM RNA-class probability 0.512198
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2184236 120 + 20766785
UGCACUUUACCCGGUCGCGCACUUCCACGUUGUAGUUCUCAAAGUACAUAUAGACGCCGCGCGCAUCGUACUUUCCCCUGGGAAGGUUAACUUUGGCUGUGCUGUGCACCCAGUUGAACU
(((((..(((((((((((((..........((((.((....)).))))..........))))).)))(((((((((....)))))))..))...))..)))..)))))............ ( -31.75)
>DroVir_CAF1 8559 120 + 1
UGCACUUGACCCGAUCCCGCACCUCCACAUUGUAGUUCUCAAAGUACAUAAAAACGCCACGUGUCUCGUACUUGCCCUUUGGCAGAUUCACUUUGGCAUUGCUGUGCAUCCAAUUGAAUU
(((((.......(....)(((.........((((.((....)).)))).......((((.(((..((.....((((....))))))..)))..))))..))).)))))............ ( -22.00)
>DroGri_CAF1 10729 120 + 1
UGCACUUCACCCGAUCCCGCACCUCUACAUUGUAGUUCUCAAAAUACAUGAAGACGCCGCGCGGAUCAUAUUUGCCCUUGGGCAGAUUUACCUUCGCGUUGCUGUGCAUCCAAUUGAAUU
(((((..((.((((((((((.(.(((.(((.(((..........)))))).))).)..))).)))))..(((((((....)))))))........).).))..)))))............ ( -33.10)
>DroWil_CAF1 12300 120 + 1
UGCAUUUAACGCGAUCCCUGACUUCUACAUUAUAGUUUUCAAAAUACAUAAAAACACCAUGAGGAUCGUAUUUGCCCUUUGGCAAAUUGAUCUUGGCAUUACUAUGCAUCCAAUCAAAUC
(((((.(((.((......(((...(((.....)))...)))....................(((((((.(((((((....)))))))))))))).)).)))..)))))............ ( -23.40)
>DroMoj_CAF1 11412 120 + 1
UGCACUUCACCCGAUCCCGCACCUCUACAUUGUAGUUCUCGAAAUACAUAAAGACGCCGCGUGGAUCGUAUUUGCCCUUGGGCAAAUUCACCUUUGCAUUGCUGUGCAUCCAAUUGAAUU
(((((..((..(((((((((.(.(((....((((.((....)).))))...))).)..))).)))))).(((((((....)))))))............))..)))))............ ( -32.60)
>DroAna_CAF1 9444 120 + 1
UGCACUUUACGCGGUCGCGGACUUCCACGUUGUAGUUCUCAAAGUACAUGAACACGCCACGGGCAUCGUACUUGCCUUUCGGCAGGUUCACCUUCGACGUGCUGUGCAUCCAGUUAAACU
(((((..(((((((.((.((....)).)).((((.((....)).))))(((((..(((..(((((.......)))))...)))..)))))...))).))))..)))))............ ( -35.60)
>consensus
UGCACUUCACCCGAUCCCGCACCUCCACAUUGUAGUUCUCAAAAUACAUAAAGACGCCACGCGGAUCGUACUUGCCCUUGGGCAGAUUCACCUUGGCAUUGCUGUGCAUCCAAUUGAAUU
(((((......((((.((((..........((((.((....)).))))............)))))))).(((((((....)))))))................)))))............ (-20.18 = -19.52 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:50 2006