| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,365,537 – 11,365,645 |
| Length | 108 |
| Max. P | 0.583958 |
| Location | 11,365,537 – 11,365,645 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.16 |
| Mean single sequence MFE | -31.77 |
| Consensus MFE | -25.10 |
| Energy contribution | -25.18 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11365537 108 + 20766785 AUCCUUGCGCCGCC---UCCCUUCCACCACUGGCUUCCCGAAUUCGAAUUCUGCUUCUGAGAAUCCUGAUGCGGCGCCGUUUGGCGCUGCGCAGCUCUAGAAAUUAGGUCA ..(((.((...(((---..............))).....((((....)))).))(((((((....(((.(((((((((....))))))))))))))).))))...)))... ( -31.14) >DroSec_CAF1 23680 108 + 1 AUCCGUGCGCCGCC---UCCCUUCCACCUCUGGCUUCCCGAAUUCGAAUCCUGCUUCUGAGAAUCCUGAUGCGGCGCCGUUUGGCGAUGCGCAGCUCUAGAAAUUAGGUCA ....(((((((((.---((........(((.(((....((....))......)))...)))......)).)))))(((....)))...)))).(((..(....)..))).. ( -27.14) >DroSim_CAF1 23385 111 + 1 AUCCGUGCGCCGCCUCCUCCCUUCUACCUCUGGCUUCCCGAAUUCGAAUCCUGCUUCUGAGAAUCCUGAUGCGGCGCCGUUUGGCGCUGCGCAGCUCUAGAAAUUAGGUCA ...((..((..(((.................)))....))....))...((((.(((((((....(((.(((((((((....))))))))))))))).))))..))))... ( -30.83) >DroEre_CAF1 25790 91 + 1 -----UGCGAC---------------CCUCUGGCUUCCCGAAUUCGAAUCCUGCUUCUGAGAAUCCUGAUGCGGCGCCGCUUGGCGCUGCGCAGCUCCAGAAAUUAGGUCA -----...(((---------------(....((.(((........))).))...(((((.((...(((.(((((((((....)))))))))))).)))))))....)))). ( -33.90) >DroYak_CAF1 24283 91 + 1 -----UGCGAC---------------CCUCUCGCCUCCCGCAUUCGAGUCCUGUUUCUGAAAAUCCUGAUGCGGCGCCGCUUGGCGCUGCGCAGCUCCAGAAAUUAGGUCA -----.((((.---------------....)))).............(.((((((((((......(((.(((((((((....))))))))))))...)))))).)))).). ( -33.90) >DroAna_CAF1 24188 92 + 1 GUCGCUCCACUAC-------------------GCCCUCCCUCUUGGAGUCCUGUUCCGGAGAAUCCUGAUGCGGCGCCGCUUGGUGCUGCGCAGCUCCAGAAAUUGGGUCA .............-------------------((((....(((.(((((((......))).....(((.(((((((((....)))))))))))))))))))....)))).. ( -33.70) >consensus AUCC_UGCGCCGC_____________CCUCUGGCUUCCCGAAUUCGAAUCCUGCUUCUGAGAAUCCUGAUGCGGCGCCGCUUGGCGCUGCGCAGCUCCAGAAAUUAGGUCA ...............................(((((..((....))........(((((((....(((.(((((((((....))))))))))))))).))))...))))). (-25.10 = -25.18 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:17 2006