Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,362,870 – 11,363,062 |
Length | 192 |
Max. P | 0.795572 |
Location | 11,362,870 – 11,362,969 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -10.92 |
Energy contribution | -10.32 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.29 |
Mean z-score | -2.50 |
Structure conservation index | 0.34 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680453 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11362870 99 + 20766785 AGCAACAAAUAUUUGC------UAGUGGCAUCCAAAAUGUGUUUCGAAAAACCGUUGA------CUGUAGCAAUUACCUGCUGUCAGCUAGCUUGGAGCGUCGCAGCAGUG ............((((------(.(((((.(((((...(.((((....)))))(((((------(.((((.......)))).))))))....)))))..)))))))))).. ( -28.90) >DroSec_CAF1 21032 97 + 1 AGCAACAAAUAUUUGC------UAGUGGCAUCUAAA--GUGUUUCAAAAAACCGUUGG------CUGUAGCAAUUACCAGCUGUCAGCUAGCUCGGAGCAUCACAGCAGUG ............((((------(.((((..(((...--(.((((....)))))(((((------(((((((........)))).))))))))..)))...))))))))).. ( -26.80) >DroSim_CAF1 20777 97 + 1 AGCAACAAAUAUUUGC------AAGUGGCAUCUAAA--GUGUUUCAAAAAACCGUUGG------CUGUAGCAACUACCUGCUGUCAGCUAGCUCGGAGCGUCACAGCAGUG .((((.......))))------..(((((.(((...--(.((((....)))))(((((------((((((((......))))).))))))))..)))..)))))....... ( -29.50) >DroEre_CAF1 23258 103 + 1 AGCAACAAAUAUUCGC------UGCUGACAGCUAAA--GCAAUUCAAAAAACCGUUGAAGCGGACUGUAGCAGGUACCUGCUGUCAGCUUGCGCGGACUGUCGCAGCAGUG ..............((------(((.(((((((...--((((.........((((....)))).(((((((((....)))))).))).))))..)).)))))))))).... ( -38.80) >DroYak_CAF1 21446 109 + 1 AGCAACAAAUAUUUGCUUUAGCUAUUGACAUCUAAA--GUAAUUUGAAAAACCGUUGAAGCGCUCUGUAGCAGUUAGCUGGUGUCAGCUUGCUCGGAGCGUCGCAGCAGUG .....(((((...((((((((..........)))))--))))))))....((.((((..((((((((.((((...(((((....)))))))))))))))))..)))).)). ( -38.00) >consensus AGCAACAAAUAUUUGC______UAGUGGCAUCUAAA__GUGUUUCAAAAAACCGUUGA______CUGUAGCAAUUACCUGCUGUCAGCUAGCUCGGAGCGUCGCAGCAGUG .((.(((..................((.....)).........((((.......)))).......))).))......(((((((..(((.......)))...))))))).. (-10.92 = -10.32 + -0.60)
Location | 11,362,969 – 11,363,062 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 74.54 |
Mean single sequence MFE | -27.04 |
Consensus MFE | -10.18 |
Energy contribution | -10.30 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.37 |
Mean z-score | -1.91 |
Structure conservation index | 0.38 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795572 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11362969 93 + 20766785 AGCAGCUCACAGCGUGCAACAUAGCUAAUAGCUUUUGUGCGUAUGCGAUGGGCAUCACUGUUUGCUUGCUGCGCUCAAUUGGAUUCUGAUUGA .(((((.....((((((.(((.(((.....)))..)))..))))))...(((((........))))))))))..(((((..(...)..))))) ( -30.80) >DroSec_CAF1 21129 84 + 1 AGCAGCUCACAGCGUGCGUCAUAGCUAAAAGCUUUUGUGCGUAUGCGAUGGGCAUCAUUGUU---------CGCUCAAUCGGAUUCUGAUUGA ....(((((..((((((((((.(((.....)))..)).))))))))..))))).........---------...((((((((...)))))))) ( -29.80) >DroSim_CAF1 20874 84 + 1 AGCAGCUCACAGCGUGCGUCAUAGCUAAAAGCUUUUGUGCGUGUGCGAUGGGCAUCAUUGUU---------CGCUCAAUCGGAUUCUGAUUGA ....(((((..(((..(((((.(((.....)))..)).)))..)))..))))).........---------...((((((((...)))))))) ( -28.40) >DroEre_CAF1 23361 78 + 1 AGCAAUCCAC-GCGUGCUUCGUAGCUAAUAGCUUUAGUCCUCGUGCGAUGGGCAUCAUUGUUUGCCCGUU--------------UCUGAUUGG ..((((((((-(.(..((....(((.....)))..))..).)))).((((((((........))))))))--------------...))))). ( -25.80) >DroYak_CAF1 21555 93 + 1 AGCAAUGCACAGCGCGCUUUAUAGCUUAUAACUUUAGUCUCUAUGCGAUGGGCAGCACUGUUUGCUUGCUUCGCUAAAUAGAAUUCUGAUUGG (((((.((((((.((((((....((.....((....))......))...)))).)).))))..)))))))...((((.(((....))).)))) ( -20.40) >consensus AGCAGCUCACAGCGUGCGUCAUAGCUAAUAGCUUUUGUGCGUAUGCGAUGGGCAUCAUUGUUUGC__G_U_CGCUCAAUCGGAUUCUGAUUGA (((((......(((((((....(((.....)))..)))))))((((.....))))..)))))............................... (-10.18 = -10.30 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:16 2006