Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,357,746 – 11,357,854 |
Length | 108 |
Max. P | 0.920795 |
Location | 11,357,746 – 11,357,854 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 89.46 |
Mean single sequence MFE | -24.96 |
Consensus MFE | -22.79 |
Energy contribution | -23.35 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.82 |
Structure conservation index | 0.91 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.920795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11357746 108 - 20766785 ACUGGCUGCAAGGAGCGCGUUAAAAGCGCAUUCUGCACAGGCAUCAGCCUUCCCGUUCCUGCCUCUUUCUUUCCCCAAAACCGAUUCACAUAUCAACACUCGCAAAAA ....((.(((.(((((((((.....)))).........((((....))))....))))))))....................(((......))).......))..... ( -23.60) >DroSec_CAF1 15935 107 - 1 ACUUGCUGCAAGGAGCGCGUUAAAAGCGCAUUCUGCACAGGCAUCCGCCUUCCAGUUCCUGCCCCUCUCUUUCCUU-AGACCGAUUCACAUAUCAACACUCGCAGAAA .....(((((((((((((.......))))...(((...((((....))))..)))................)))))-.....(((......))).......))))... ( -26.30) >DroEre_CAF1 18234 101 - 1 AGUCGCUGCAAGGAGCGCGUUAAAAGCGCAUUCUGC-CGGGCAUCCGCCUUCCAGUUCCUGCCCCUU----UCCCC-AAACC-AUUCACAUACCAGCACUCGCAGAAA .....((((.((((((((((.....))))....((.-.((((....))))..))))))))((.....----.....-.....-............))....))))... ( -24.13) >DroYak_CAF1 16222 107 - 1 ACACGCUGCAAGGAGCGCGUUAAAAGCGCAUUCUGCUCAGGCAUCCGCCUUCCAGUUCCUGCCCCUUUCUUUCCUC-AAACCGAUUCACAUAUCAACACUCGCAGAAA .....((((.((((((((((.....)))).........((((....))))....))))))................-.....(((......))).......))))... ( -25.80) >consensus ACUCGCUGCAAGGAGCGCGUUAAAAGCGCAUUCUGCACAGGCAUCCGCCUUCCAGUUCCUGCCCCUUUCUUUCCCC_AAACCGAUUCACAUAUCAACACUCGCAGAAA .....((((.((((((((((.....)))).........((((....))))....))))))......................(((......))).......))))... (-22.79 = -23.35 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:14 2006