Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,356,139 – 11,356,239 |
Length | 100 |
Max. P | 0.619218 |
Location | 11,356,139 – 11,356,239 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.71 |
Mean single sequence MFE | -34.00 |
Consensus MFE | -23.36 |
Energy contribution | -23.72 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.21 |
Mean z-score | -1.67 |
Structure conservation index | 0.69 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11356139 100 - 20766785 -GCGGUAUCAGCGGAUCUGGGGUCUUAGCAGCUGCAAGUUUAGCGAAAAGUAAGUAUCGCAAACUUGUAGACUGGUGAGUACCUGGUA-------------GAAGAAUUUUAUG -((.......))...((((((((((((.(((((((((((((.((((..........)))))))))))))).))).)))).))))..))-------------))........... ( -34.10) >DroSec_CAF1 14181 113 - 1 -GUGGUAUCUGCGGAUCUGGGGUCUCAGCAGCUGCAAGUUCAGCGUAAAGUAAGUAUCGCAAAUUUGUAGACUGGUGAGUACCUGGUAAUGUUACACUUUAGCAGAAUUUUAUG -......(((((.......((((((((.((((((((((((..(((............))).))))))))).))).)))).)))).(((....)))......)))))........ ( -35.20) >DroSim_CAF1 14134 113 - 1 -GCGGUAUCUGCGGAUCUGGGGUCUCAGCAGCUGCAAGUUCAGCGUAAGGUAAGUAUCGCAAAUUUGUAGACUGGUGAGUACCUGGUAAUGUUACACUUUAACGGAUUUUUAUG -((((...))))(((((((((((((((.((((((((((((..(((............))).))))))))).))).)))).)))).(((....))).......)))))))..... ( -36.10) >DroEre_CAF1 16474 113 - 1 CGCGGUAUCUGCGGAUCUGGGGUCUCAGCAGCUGCAAGC-CAGAGAAAAGUGAGUAGCGCAAGUUUGCAGACUGGUAAAUACCUGGUAAAGUUCCAUUUUAGAUGACUUUUAUG .(((((..(((.((((.....)))))))..)))))..((-(((......(((.....)))..((((((......))))))..)))))(((((..((((...))))))))).... ( -25.70) >DroYak_CAF1 14509 114 - 1 CGCGGUAUCUGCGGAUCUGGGGUCUCAGCAGCUGCAAGCUCGGAAAAAAGUGACUAUCGCCAGGUUGCGGACUGGUAAAUACCUGGUGAAGUUACAUUUUAGGUGACUUUAAUG (((((...)))))..((((((.(..(((...)))..).)))))).....((((((.((((((((((((......)))...)))))))))))))))(((..((....))..))). ( -38.90) >consensus _GCGGUAUCUGCGGAUCUGGGGUCUCAGCAGCUGCAAGUUCAGCGAAAAGUAAGUAUCGCAAAUUUGUAGACUGGUGAGUACCUGGUAAAGUUACACUUUAGAAGAAUUUUAUG ..(((.(((....))))))((((((((.(((((((((((...(((............)))..)))))))).))).)))).)))).............................. (-23.36 = -23.72 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:13 2006