Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,354,372 – 11,354,488 |
Length | 116 |
Max. P | 0.665021 |
Location | 11,354,372 – 11,354,488 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 90.37 |
Mean single sequence MFE | -32.96 |
Consensus MFE | -25.92 |
Energy contribution | -27.30 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.09 |
Mean z-score | -1.66 |
Structure conservation index | 0.79 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665021 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11354372 116 - 20766785 AAGGGUUCUUUGACUUCGAUUUCACUUCAAAGGGGUUUGCGAUUGAGUCCUGGGAUCGCAAUUAACUGAAUAUUUGGAGCACCCUGUUCCCGCAUCGAUUAUAGUGGCUCAAUCUA .(((.((((((((.............)))))))).)))..((((((((((((.(((((((......)).......(((((.....))))).....))))).))).))))))))).. ( -30.62) >DroSec_CAF1 12427 116 - 1 CAAGGUUCUUUGACUACGAUUUGACUUCAAAGGGGUUUGCGAUUGAGUCCUGGGAUCUCAAUUAAGUGAAUAUUUGGAGCACCCUGUUCCCGCAUCGAUUAUAGUGGCUCAAUCUA ((((.((((((((.............)))))))).)))).((((((((((((.(((((((......)))......(((((.....)))))......)))).))).))))))))).. ( -32.92) >DroSim_CAF1 12401 116 - 1 CAAGGUUCUUUGACUUCGAUUUGACUUCAAAGGAGUUUGCGAUUGAGUCCUGGGAUCUCAAUUAACUGAACAUUUGGAGCACCCUGUUCCCGCAUCGAUUAUAGUGGCUCAAUCUA ((((.((((((((..((.....))..)))))))).)))).((((((((((((.(((((((......)))......(((((.....)))))......)))).))).))))))))).. ( -36.20) >DroEre_CAF1 14745 105 - 1 AAGGGUUCUUUGACUUCGAU-----------GGGGACUGCGAUUGAGUCCUGGGAUCUCAAUUAACCGAAUAUUUGGAGCACCCUGUUCCCGCAUCGAUUAUAGUGGCUCAAUCUA ..(((((((.(((..(((((-----------((((((((((((((((((....)).)))))))..((((....)))).)))....).)))).))))))))).)).)))))...... ( -32.10) >consensus AAAGGUUCUUUGACUUCGAUUUGACUUCAAAGGGGUUUGCGAUUGAGUCCUGGGAUCUCAAUUAACUGAAUAUUUGGAGCACCCUGUUCCCGCAUCGAUUAUAGUGGCUCAAUCUA .(((.((((((((.............)))))))).)))..((((((((((((.(((((((......)))......(((((.....)))))......)))).))).))))))))).. (-25.92 = -27.30 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:12 2006