Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,353,174 – 11,353,274 |
Length | 100 |
Max. P | 0.936994 |
Location | 11,353,174 – 11,353,274 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 88.31 |
Mean single sequence MFE | -14.85 |
Consensus MFE | -13.30 |
Energy contribution | -12.98 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.10 |
Mean z-score | -1.71 |
Structure conservation index | 0.90 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.936994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11353174 100 + 20766785 UUGCAAUCAGCAGAUGCAAGCCAAGUCCCGAAAAUUGUCCGAAGAAGGGACAUAAACAAAAAAAAAAAAGGAACAGAUAUUUAUAUAUAUAAAGACAAAG (((((.((....))))))).....(((........(((((.......)))))...........................(((((....)))))))).... ( -13.00) >DroSec_CAF1 11244 88 + 1 UUGCAAUCAGCAGAUGCAAGCCAAGUCCCGAAAAUUGUCCGAAGAAGGGACAUAA----------AAAAGGAACAGAUAUUUAUA--UAUAAAGACAAAG (((((.((....))))))).....(((((......(((((.......)))))...----------....)).....((((....)--)))...))).... ( -14.82) >DroSim_CAF1 11200 88 + 1 UUGCAAUCAGCAGAUGCAAGCCAAGUCCCGAAAAUUGUCCGAAGAAGGGACAUAA----------AAAAGGAACAGAUAUUUAUA--UAUAAAGACAAAG (((((.((....))))))).....(((((......(((((.......)))))...----------....)).....((((....)--)))...))).... ( -14.82) >DroEre_CAF1 13525 91 + 1 UUGCAAUCAGCAGAUGCAAGCCAAGUCCCGAAAAUUGUCCGAAAAAGGGACAAAA----AAGAAA---AAGAACAGAUAUUUAUA--UAUAAAGACAAAG (((((.((....))))))).....(((.......((((((.......))))))..----......---........((((....)--)))...))).... ( -13.80) >DroYak_CAF1 11503 94 + 1 UUGCAAUCAGCAGAUGCAAGCCAAGUCCCGAAAAUUGUCCGAAAAAGGGACAAAA----AAUGAAAUAAGAAACAGAUAUUUAUA--UAUAGAGGCAGAG (((((.((....)))))))(((..(((((.................)))))....----.................((((....)--)))...))).... ( -17.83) >consensus UUGCAAUCAGCAGAUGCAAGCCAAGUCCCGAAAAUUGUCCGAAGAAGGGACAUAA____AA__AAAAAAGGAACAGAUAUUUAUA__UAUAAAGACAAAG (((((.((....))))))).....(((........(((((.......)))))...........................(((((....)))))))).... (-13.30 = -12.98 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:11 2006