Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,352,825 – 11,352,917 |
Length | 92 |
Max. P | 0.763290 |
Location | 11,352,825 – 11,352,917 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 91.51 |
Mean single sequence MFE | -28.82 |
Consensus MFE | -24.63 |
Energy contribution | -25.52 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.08 |
Mean z-score | -1.79 |
Structure conservation index | 0.85 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11352825 92 - 20766785 UCUAGACU--CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAAUACGGCUAACAGCUAACAAAUCGGGAGCAGC ........--((((((((((((((.((.....)).))).)))).(((...(((((..........)))))....)))........))).)))). ( -29.90) >DroSec_CAF1 10896 92 - 1 UCUAGACU--CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAACACGGCUAACAGCUAACAAAUCGGGAGCAGC ........--((((((((((((((.((.....)).))).)))).(((...(((((..........)))))....)))........))).)))). ( -29.90) >DroSim_CAF1 10853 92 - 1 UCUAGACU--CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAAUACGGCUAACAGCUAACAAAUCGGGAGCAGC ........--((((((((((((((.((.....)).))).)))).(((...(((((..........)))))....)))........))).)))). ( -29.90) >DroEre_CAF1 13187 92 - 1 UCUAGACU--CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAAUACGGCUAACAGCUAACGAAUCGGGAACAGC ....((((--(((...))))))).((((((....(((.....)))((...(((((..........)))))....))........)))))).... ( -27.30) >DroYak_CAF1 11152 92 - 1 UCUAGACU--CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAAUGCGGCUAACAGCUAACAAAUCGGGAGCAGC ........--((((((((((((((.((.....)).))).)))).(((...((((((........))))))....)))........))).)))). ( -33.90) >DroAna_CAF1 11159 85 - 1 UCUAGACUAUCUGC-CCGGAGUCAAUUCCGCAGACUGACCUCCAGGCACGAGCCGCCCCAAAA--------AGAGCCCCUAAAUCGGGAGCAGC .........(((((-(.(((((((.((.....)).))).)))).)))).))............--------...(((((......))).))... ( -22.00) >consensus UCUAGACU__CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAAUACGGCUAACAGCUAACAAAUCGGGAGCAGC ..........((((((((((((((.((.....)).))).)))).(((...(((((..........)))))....)))........))).)))). (-24.63 = -25.52 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:10 2006