Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,344,025 – 11,344,123 |
Length | 98 |
Max. P | 0.608027 |
Location | 11,344,025 – 11,344,123 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 73.32 |
Mean single sequence MFE | -26.22 |
Consensus MFE | -7.68 |
Energy contribution | -12.48 |
Covariance contribution | 4.80 |
Combinations/Pair | 1.21 |
Mean z-score | -1.71 |
Structure conservation index | 0.29 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11344025 98 + 20766785 GAGGGGAAGUCGCAUUGGAAGGGGUAGUUUCACGGACUAUAGCUGGUAAAAUGCCCUUACUAUCCAUAAAAUAUCCCUUUAAAACCAUAAAGGACAAA (((((((.((.....(((((((((((.(((..(((.(....))))..))).)))))))....))))....)).)))))))....((.....))..... ( -24.60) >DroSec_CAF1 2143 98 + 1 GAGGGGGAGUCGCAUUGGAUGGGGUAGUUUCACGGACUCUAUCUGGAGAAAUGUCCUUACUGUCCAUGCAAUAUCCCUUCAAAACCAUAUAGAACAAA (((((((.((.((((.((((((((..(((((.((((.....))))..)))))..))...)))))))))).)).))))))).................. ( -30.70) >DroSim_CAF1 2103 98 + 1 GAGGGGGAGUCGCAUUGGAUGGGGUAGUUUCACGGACUCUAGCUGGAGAAAUGCCCUUACUGUCCAUGCAAUAUCCCUUCAAAACCAUAUACACCAAA (((((((.((.((((.((((((((((.(((..(((.(....))))..))).))))))....)))))))).)).))))))).................. ( -33.10) >DroEre_CAF1 4409 85 + 1 GAGGGGUAAUCGCACUGGAAGGGGUCGUUUCACGGACUCCAAGUGCUGAAAUGCCCUUACUGCCUAU-------------GAAAUCAUAUAGGACACA .(((((((.(((((((....((((((........)))))).))))).))..)))))))..(((((((-------------(......)))))).)).. ( -29.90) >DroYak_CAF1 2125 77 + 1 GAAGGGGAAUCGCAUUGGAAGGGGUCGCUUCACGGACUGAAAGUGGUGAAAUGCCCAU--------C-------------GAUAUCAUAUAGGACAAC .............(((((...(((.((.(((((.(.(.....)).))))).))))).)--------)-------------)))............... ( -12.80) >consensus GAGGGGGAGUCGCAUUGGAAGGGGUAGUUUCACGGACUCUAACUGGUGAAAUGCCCUUACUGUCCAU__AAUAUCCCUU_AAAACCAUAUAGGACAAA (((((((........(((((((((((.(((..(((.......)))..))).)))))))....)))).......))))))).................. ( -7.68 = -12.48 + 4.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:06 2006